Pairwise Alignments

Query, 296 a.a., LysR family transcriptional regulator from Methanococcus maripaludis S2

Subject, 317 a.a., predicted DNA-binding transcriptional regulator (RefSeq) from Escherichia coli BW25113

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 66/279 (23%), Positives = 129/279 (46%), Gaps = 5/279 (1%)

Query: 1   MDPKISYFQTFLFAAKTKSFSKAAKKLGVTQGTVSNHISVLEKFFDAQLFLRTPEGVDLT 60
           M  ++S  + F+  A++ SF+ AAK L +TQ  ++  I  +E+    QLF RT   V LT
Sbjct: 1   MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQLFERTTRKVTLT 60

Query: 61  TEGNILYENAEKLLENISNAKQQMRILHEHPEGLIRIAASTTPGEHLLPSIIKDYTKVYR 120
             G  L   A +L++        +R ++ +  G++ +A   T   + LP  I  + ++Y 
Sbjct: 61  KAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYP 120

Query: 121 DVSFQIQITDSEKCFKLLEDRAVDI-IAVGNIYDGSYESEVIGKDRLVLVVPPDHELAKK 179
           ++  +I    +  C + +     D  I + N+ + S +   +  +  VL    DH LAKK
Sbjct: 121 NIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKK 180

Query: 180 GVAKLSDILKEDYIDREVGSGTREIFVDALQDKGYSMMDLHTIMSLGSNSSIITAVSEGY 239
            + +  +++    I     SG R +    L DK + +   + +  L ++  ++ A   G 
Sbjct: 181 QLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEA---GL 237

Query: 240 GISIISEIPAKKAADAGQLKIVPIEDLDLTRYMYLVKGK 278
           GIS +  + A   A    +  +P+ +  + R + +++ K
Sbjct: 238 GISALPGL-AMPHAPYSSIIGIPLVEPVIRRTLGIIRRK 275