Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 562 a.a., SSU ribosomal protein S1p from Variovorax sp. SCN45

 Score = 50.1 bits (118), Expect = 1e-10
 Identities = 22/78 (28%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVM 66
           +EG ++ G V ++  +GAF++L    G +G++HI++++   +++  + ++ GQ + AK++
Sbjct: 190 KEGAVVRGVVKNITEYGAFVDL---GGIDGLLHITDMAWRRVRHPSEVVQAGQEITAKIL 246

Query: 67  RVTPHKNQIDLSLKRATD 84
           +    KN++ L LK+  D
Sbjct: 247 KFDTEKNRVSLGLKQMGD 264



 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 14/94 (14%)

Query: 12  IIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWI-KNIRDH--IKKGQRVVAKVMRV 68
           + G V ++  +GAF+EL   PG EG+VH+SE+   W  KNI  +  +  G  V   V+ +
Sbjct: 280 LFGKVTNIADYGAFVEL--EPGIEGLVHVSEMD--WTNKNIAPNKIVSLGDEVEVMVLEI 335

Query: 69  TPHKNQIDLSLKRATDQQKKVKVQEWKRFQRAEK 102
              K +I L +K+        K   W+ F +  K
Sbjct: 336 DEDKRRISLGMKQC-------KANPWQEFAQNTK 362



 Score = 37.7 bits (86), Expect = 5e-07
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVM 66
           ++G I+ G V  V + GA I+L E     G +  SE+S   +++ R+ +K+G  V A V+
Sbjct: 449 DKGQIVTGKVKTVDARGAEIDLGE--DIIGYLRASEISRDRVEDARNVLKEGDEVTAIVV 506

Query: 67  RVTPHKNQIDLSLKR 81
            V      I LS+K+
Sbjct: 507 NVDRKTRNIQLSIKQ 521