Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 570 a.a., SSU ribosomal protein S1p from Sphingobium sp. HT1-2

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 9   GDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWI-KNIRDH--IKKGQRVVAKV 65
           G  + G V ++  +GAF+EL   PG EG+VH+SE+S  W  KN+     +   Q V   V
Sbjct: 285 GAKLSGRVTNITEYGAFVEL--EPGIEGLVHVSEMS--WTKKNVHPGKIVSTSQEVEVIV 340

Query: 66  MRVTPHKNQIDLSLKRA 82
           + V P K +I L LK+A
Sbjct: 341 LEVDPEKRRISLGLKQA 357



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 8   EGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVMR 67
           EG II G V ++  +GAF++L    G +G++H++++S   I +  + I  G  V  +++R
Sbjct: 199 EGQIIEGVVKNITDYGAFVDL---GGIDGLLHVTDLSYKRINHPNEMINIGDTVRVQIIR 255

Query: 68  VTPHKNQIDLSLKR 81
           +     +I L +K+
Sbjct: 256 INRETQRISLGMKQ 269