Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 565 a.a., 30S ribosomal protein S1 from Magnetospirillum magneticum AMB-1

 Score = 47.0 bits (110), Expect = 9e-10
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 14  GNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWI-KNIRDH--IKKGQRVVAKVMRVTP 70
           G V ++  +GAF+EL   PG EG+VH+SE+S  W  KN+     +   Q V   V+ V P
Sbjct: 290 GRVTNITDYGAFVEL--EPGVEGLVHVSEMS--WTKKNVHPGKIVSTSQEVEVMVLDVDP 345

Query: 71  HKNQIDLSLKR 81
            K +I L LK+
Sbjct: 346 QKRRISLGLKQ 356



 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVM 66
           +EG I+ G V ++  +GAF++L    G +G++H+++++   I +  + +  GQ V  +V+
Sbjct: 198 KEGQILEGVVKNITDYGAFVDL---GGVDGLLHVTDIAWKRINHPSEALHIGQTVKVQVI 254

Query: 67  RVTPHKNQIDLSLKR 81
           R      +I L +K+
Sbjct: 255 RFNSETQRISLGIKQ 269



 Score = 40.8 bits (94), Expect = 6e-08
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 10/81 (12%)

Query: 5   FPEEGDIIIGNVIDVKSFGAFIELLEYPGK-EGMVHISEVSSGWI---KNIRDHIKKGQR 60
           FP+ G ++ G + ++  FG FI L   PG  +GMVH+S++   W    +    + KKG  
Sbjct: 369 FPQ-GTLVEGEIKNITEFGLFIGL---PGDIDGMVHLSDLD--WATPGEQAIQNFKKGDV 422

Query: 61  VVAKVMRVTPHKNQIDLSLKR 81
           V AKV+ V   K +I L +K+
Sbjct: 423 VKAKVLDVDVEKERISLGIKQ 443