Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 556 a.a., 30S ribosomal protein S1 from Alteromonas macleodii MIT1002

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 9/79 (11%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKN----IRDHIKKGQRVV 62
           E+GD + G +  +  FG FI L    G +G+VH+S++S  W K+    +RD+ KKG  + 
Sbjct: 362 EKGDKVSGKIKSITDFGIFIGL--DGGIDGLVHLSDIS--WNKSGEDAVRDY-KKGDEIS 416

Query: 63  AKVMRVTPHKNQIDLSLKR 81
           A V++V P + +I L +K+
Sbjct: 417 AVVLQVDPERERISLGVKQ 435



 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVM 66
           EEG  I G V ++  +GAF++L    G +G++HI++++   +K+  + +  G  +  KV+
Sbjct: 190 EEGHEIKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 67  RVTPHKNQIDLSLKR 81
           +    K ++ L +K+
Sbjct: 247 KFDKEKQRVSLGMKQ 261



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 8   EGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWI-KNIRDH--IKKGQRVVAK 64
           EG  I G V ++  +G F+E+ +  G EG+VH+SE+   W  KNI     +  G  V   
Sbjct: 276 EGTKINGQVTNLTDYGCFVEIED--GVEGLVHVSEMD--WTNKNIHPSKVVNLGDTVDVM 331

Query: 65  VMRVTPHKNQIDLSLKR 81
           V+ +   + +I L LK+
Sbjct: 332 VLEIDEERRRISLGLKQ 348