Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 557 a.a., 30S ribosomal protein S1 from Acinetobacter radioresistens SK82

 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVM 66
           EEG  + G + ++  +GAF++L    G +G++HI++++   IK+  + ++ GQ V  KV+
Sbjct: 190 EEGQTVTGTIKNLTDYGAFVDL---GGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVL 246

Query: 67  RVTPHKNQIDLSLKR 81
           +    +N++ L LK+
Sbjct: 247 KFDRERNRVSLGLKQ 261



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHI---KKGQRVVA 63
           ++G+ + G +  +  FG FI L    G +G+VH+S++S  W +   + I   KKG  V A
Sbjct: 362 DKGEKVSGTIKSITDFGIFIGLPG--GIDGLVHLSDIS--WNEQGEEAIRRYKKGDTVEA 417

Query: 64  KVMRVTPHKNQIDLSLKR 81
            ++ V    N+I L +K+
Sbjct: 418 VILSVDAEGNRISLGIKQ 435



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 13/99 (13%)

Query: 3   NDFPEEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDH--IKKGQR 60
           N +P+ G I+   V ++  +G F E+ E  G EG+VH+SE+     KNI     ++ G  
Sbjct: 272 NRYPK-GSIVKARVTNLTDYGCFAEIAE--GVEGLVHVSEMDH-TNKNIHPSKVVQIGDE 327

Query: 61  VVAKVMRVTPHKNQIDLSLKRATDQQKKVKVQEWKRFQR 99
           V   V+ V   + +I L +       K+ +   W+ F +
Sbjct: 328 VDVMVLEVDEERRRISLGI-------KQTRANPWEEFAK 359



 Score = 38.1 bits (87), Expect = 4e-07
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 3   NDF---PEEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQ 59
           NDF    E G ++ G V  V + GA ++L +    E  +  SE++   +++    ++ GQ
Sbjct: 442 NDFLAANERGALVKGTVTAVDARGATVKLADEV--EATLKASEINRDRVEDATKFLEVGQ 499

Query: 60  RVVAKVMRVTPHKNQIDLSLKRATDQQKKVKV 91
            V AK++ V      I+LS+K   + ++K  V
Sbjct: 500 EVEAKIINVDRKSRSINLSIKAKDEAEEKEAV 531