Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 604 a.a., Uptake hydrogenase large subunit from Xanthobacter sp. DMC5

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 3   KVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62
           ++ ++P++R+EGH +  + +D      +     T  RG E  + GR   +    V RICG
Sbjct: 17  RIVVDPVTRIEGHMRCEVNVDSNNIIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERICG 76

Query: 63  ICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPD- 121
           +C   H L SV+AV+ A   ++P+ A  +RE+M      H H +HFY+L A D+V   + 
Sbjct: 77  VCTGCHALTSVRAVEDALQIKIPNNAFLIREIMAKVLQWHDHVVHFYHLHALDWVNPVNA 136

Query: 122 --SDPAARNII 130
             +DP A +++
Sbjct: 137 LKADPKATSVL 147



 Score = 31.6 bits (70), Expect = 7e-05
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 272 KYPYNKKVGYPDGLYRVGPLAMLNVCDSMPTPLAEEARKDFADTFGKPANQSLAYNHA-- 329
           KY + K   +      VGPLA   +  +      +    +   TF   A  +L    A  
Sbjct: 394 KYSWIKAPRWKGNAVEVGPLARYILAYAQGVDYVKGQVDEALGTFNTLAGTNLTAKQALP 453

Query: 330 -----RLIELLASCERVKELLEDSEITSTDIKA-------------EVEPKAGNGVGAIY 371
                 L   L +    K +L+D +    +IKA                PK   GVG + 
Sbjct: 454 TTIGRTLARALEAHYCAKMMLDDFDHLIANIKAGDTSTANMEKWDPATWPKEAKGVGTVA 513

Query: 372 APRGTLFHNYETDDKGIVVKANMIVASTHN 401
           APRG L H  +  D G +     +V +T N
Sbjct: 514 APRGGLGHWIKIKD-GRIENYQCVVPTTWN 542