Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 485 a.a., Uptake hydrogenase large subunit (EC 1.12.99.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 82.0 bits (201), Expect = 4e-20
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 5/197 (2%)

Query: 1   MGKVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRI 60
           M ++ + P +R+EG  +V + +    +    +++ T  RGFEQ + G+   +    VPRI
Sbjct: 1   MTRLLVGPFNRVEGDLEVQLDVQ-GDRVASAQVNATMYRGFEQILQGKAPHDALVYVPRI 59

Query: 61  CGICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGP 120
           CGIC     +AS +A+ A  G  +P+  +    ++     +  H  HFY    PDF   P
Sbjct: 60  CGICSVSQSVASARALAALGGIAMPANGQHASNVILATENLADHLTHFYLFFMPDFT-RP 118

Query: 121 DSDPAARNIIGVIGAAP---EVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALS 177
                A +   V   AP   E  + A A R+   +++ T+GG+  H  +  PGG ++ + 
Sbjct: 119 VYAAHAWHTEAVRRFAPNHGEQVRAATAARQRWLTLLGTLGGKWPHTQSIEPGGSTRPID 178

Query: 178 EEKRDELLNEIDEMIAY 194
             +R  LL+ + E  A+
Sbjct: 179 AAERVRLLSRVREFRAF 195