Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 414 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

 Score =  147 bits (370), Expect = 8e-40
 Identities = 130/425 (30%), Positives = 192/425 (45%), Gaps = 53/425 (12%)

Query: 4   VTIEPLSRLEGHGKVSITLDDAGKPTDVKL-HITALRGFEQFVVGRPAEEVPRIVPRICG 62
           VTI P +R EGH K+ + +DD G  T     + T +RGFE  + G+ A   P  V RICG
Sbjct: 5   VTISPTTRHEGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKTAAFGPIAVMRICG 64

Query: 63  ICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDS 122
           ICQ  H +AS +A++ A   E+P     LREL+ LGN MHSH LH  +L   D  L P+ 
Sbjct: 65  ICQATHGIASCEAIENAIDMEIPKDGMILRELLGLGNRMHSHPLH--HLLIVDDFLKPEE 122

Query: 123 DPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKRD 182
               R          E  K    MR+ GQ +V+  GG  IHP   + GG+   ++E  + 
Sbjct: 123 AGTLR---------VEGIKLIQKMRKAGQMVVDITGGEGIHPPNLMVGGMRTNITERAKS 173

Query: 183 ELLNEIDEMIAYGQDGIALIKSLNEKYMDLAKTLGVIDTWYLGMVKDGKHNFYGDTLRFM 242
           +L     E        + +++ L E+Y+D    +G+ D         GKHN     L ++
Sbjct: 174 KLYYACREYEKDCNAMLEVLEMLMERYLD---EIGIPDL--------GKHN-----LPYI 217

Query: 243 SPDGKQTTDFKPSEYLDNIGEHVVGHNYVKYPYNKKVGYPD-GLYRVGPLAMLNVCDSMP 301
           + D   T   + +    ++ E      Y  +P   +        YR  P           
Sbjct: 218 ATD--STFGNRDAINWKDVTEVPAQRYYADFPDIAQTATNQIPFYRGNP----------- 264

Query: 302 TPLAEEARKDFADTFG--KPANQSLAYNHARLIELLASCERVKELLEDSEITST--DIKA 357
              AE   +     +G  KPA  ++  N AR +E   + +R  EL+++  I  T  ++  
Sbjct: 265 ---AEGGPRARMIKYGNFKPAGGAMDLNLARAMENFEAVKRSLELIDELNINGTVREVPN 321

Query: 358 EVEPKAGNGVGAIYAPRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAIQ----QAA 413
               K   G+G   APR T  H  +    G + K N+I AST N P +EKAI+    Q A
Sbjct: 322 FYNAKEEFGIGVHEAPRATNTHMAKMGKDGRIEKYNIIAASTWNFPAVEKAIEGYHHQYA 381

Query: 414 EVVFK 418
           EV+ +
Sbjct: 382 EVIMR 386