Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

 Score =  139 bits (349), Expect = 2e-37
 Identities = 126/421 (29%), Positives = 186/421 (44%), Gaps = 62/421 (14%)

Query: 1   MGK-VTIEPLSRLEGHGKVSITLDDAGKPTDVK-LHITALRGFEQFVVGRPAEEVPRIVP 58
           MGK V I P +R EGH K+ + +DD G       L +T +RGFE+F+VG+ AE  P  V 
Sbjct: 1   MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVS 60

Query: 59  RICGICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVL 118
           R CGIC   H  +SV+A++ A G   P     LREL  LGN MHSH LH  +L APDF+ 
Sbjct: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLH-EFLIAPDFI- 118

Query: 119 GPDSDPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSE 178
            P++D              E  K+   MR+ GQ IV+TIGG AIH      GG+ K ++E
Sbjct: 119 -PEADRV------------EYIKRIQEMRKTGQFIVDTIGGEAIHAPNIKVGGMLKNITE 165

Query: 179 EKRDELLNEIDEMIAYGQDGIALIKSLNEKYM-----DLAKTLGVIDTWYLGMVKDGKHN 233
               ++  +  E     ++ +  +  + E  M     ++ + LG  D  Y+         
Sbjct: 166 NAASKIYYKCREYEKLAKEHVEYLIPIFESNMLADGTEIPEKLGYHDFGYI-----ATDA 220

Query: 234 FYGDTLRFMSPDGKQTTDFKPSEYLDNIGEHVVGHNYVKYPYNKKVGYPDGLYRVGPLAM 293
            YG+       D  +  ++ P +  +   + V        P      Y   L  VGP   
Sbjct: 221 TYGNRENI---DQSKVVEYTPYDVYE---KDVAVQACTTIP-----RYNGRLMEVGP--- 266

Query: 294 LNVCDSMPTPLAEEARKDFADTFGKPANQSLAYNHARLIELLASCERVKELLEDSEITST 353
                          R  FA         ++A + AR  E +   +R  E++++ ++   
Sbjct: 267 ---------------RARFAKFHDFKNKGAMAIHIARAYENVVHVKRAMEIIDELDVNGK 311

Query: 354 DIKAEVEPKAGN----GVGAIYAPRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAI 409
                 EP  G+    G+G   A RG   H    D KG +   N IVA+T N+P + KA 
Sbjct: 312 --TRSNEPILGDGEKIGLGVHEAARGHNTHQAAIDAKGRITYYNAIVATTWNIPLIGKAT 369

Query: 410 Q 410
           +
Sbjct: 370 E 370