Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 496 a.a., Ni/Fe hydrogenase subunit alpha from Magnetospirillum magneticum AMB-1

 Score =  352 bits (902), Expect = e-101
 Identities = 185/416 (44%), Positives = 262/416 (62%), Gaps = 5/416 (1%)

Query: 3   KVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62
           ++ IEP+SR+EGHGKV+I LDD  +   V+LHI   RGFE+F+ GRP  EVP +V R+CG
Sbjct: 18  RIVIEPVSRVEGHGKVTILLDDNNQVHQVRLHIVEFRGFEKFIEGRPYWEVPVLVQRLCG 77

Query: 63  ICQTPHHLASVKAVDAAW-GAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPD 121
           IC   HHLA+ KA+D    G  +   AEK+R LMH G M+ SHALHF++L++PD + G D
Sbjct: 78  ICPVSHHLAASKAMDMIVNGGILTPTAEKIRRLMHYGQMLQSHALHFFHLSSPDLLFGFD 137

Query: 122 SDPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKR 181
           SD A RNI+GV  A P+VAK  + +R+ GQ ++    G+ +H    VPGGV+K+L+ E+R
Sbjct: 138 SDVAKRNIVGVAAANPDVAKMGVLLRKFGQEVIRVTSGKRVHGTGSVPGGVNKSLTAEER 197

Query: 182 DELLNEIDEMIAYGQDGIALIKSLNEKYMDLAKTLGVIDTWYLGMVKD-GKHNFYGDTLR 240
           D LL + D+MIA+ +D + +IK L+     L    G + +  + +V D G  +FY   LR
Sbjct: 198 DYLLKDSDQMIAWSRDAVRIIKGLHRSNPALYDAFGAVPSTMMSLVDDKGALDFYHGALR 257

Query: 241 FMSPDGKQTTD-FKPSEYLDNIGEHVVGHNYVKYPYNKKVGYPDGLYRVGPLAMLNVCDS 299
               DG+   D      Y   + E V   +Y+K+PY   +G   G Y+VGPLA +  CDS
Sbjct: 258 ARDKDGEVIFDQVSYQGYNTLLTEGVKSWSYMKFPYITTLGEEKGWYKVGPLARIQNCDS 317

Query: 300 MPTPLAEEARKDFADTFG-KPANQSLAYNHARLIELLASCERVKELLEDSEITSTDIKAE 358
           +PTP AEE R +F    G KP + SL ++ AR+IE+L + E +K+LL D +I   D+ AE
Sbjct: 318 IPTPQAEEERVEFVAHGGAKPMHGSLGFHWARMIEMLCAAETIKDLLLDPDIMGADLMAE 377

Query: 359 VEPKAGNGVGAIYAPRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAIQQAAE 414
             P+ G G+G I APRGTLFH+Y  DD  +V  AN+IV++T+N   M  A++  A+
Sbjct: 378 -GPRRGEGIGVIEAPRGTLFHHYRVDDNDLVTYANLIVSTTNNNTAMNVAVRDVAK 432