Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 512 a.a., Ni,Fe-hydrogenase I large subunit from Magnetospirillum magneticum AMB-1

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 3   KVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62
           K+   P++R+EG  ++ + + D G   D     T  RGFE+ ++GR A +   + PRICG
Sbjct: 5   KILDVPVNRVEGDLELRLEIAD-GMVVDAWSAGTMFRGFERLLIGRGALDGLVVTPRICG 63

Query: 63  ICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHA-----LHFYYLAAPDFV 117
           IC T H + + KA+DA  GA+VP    +LR L  +   + S       +     A P + 
Sbjct: 64  ICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFANPAYR 123

Query: 118 LGPDSDPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKA 175
             P  D A R    + G   E   +A+   +    I+  IGG+  H    VPGG+S A
Sbjct: 124 AQPLYDEAVRRYAPLAG---EAVAEAVRETKHVVEIIAIIGGQWPHSSFMVPGGLSYA 178