Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 182 a.a., NADH dehydrogenase from Pseudomonas simiae WCS417

 Score = 48.1 bits (113), Expect = 2e-10
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 102 PAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIE----------- 150
           P E + LP +    +  I++ ++P    + CVAC +C   CPV  IS++           
Sbjct: 36  PEEAVYLPPRY---RGRIVLTRDPDGEER-CVACNLCAVACPVGCISLQKAETEDGRWYP 91

Query: 151 DIAVIDTDKCIYCTVCSQTCPWNAI 175
           D   I+  +CI+C +C + CP  AI
Sbjct: 92  DFFRINFSRCIFCGLCEEACPTTAI 116



 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 308 CIRCGACAMKCPTGALKMGKMVHEG----KEYARVEFSPALCNECGECVDVCPQKTLELT 363
           C+ C  CA+ CP G + + K   E      ++ R+ FS   C  CG C + CP   ++LT
Sbjct: 62  CVACNLCAVACPVGCISLQKAETEDGRWYPDFFRINFS--RCIFCGLCEEACPTTAIQLT 119

Query: 364 GDDKM 368
            D +M
Sbjct: 120 PDFEM 124



 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 12/65 (18%)

Query: 227 EACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSE------EKCAYCGPCAIKCPT 280
           E C AC LC  +CPV  ISL+      K  T++G  + +       +C +CG C   CPT
Sbjct: 60  ERCVACNLCAVACPVGCISLQ------KAETEDGRWYPDFFRINFSRCIFCGLCEEACPT 113

Query: 281 GAIKV 285
            AI++
Sbjct: 114 TAIQL 118



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 17/69 (24%)

Query: 265 EEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKAN--------EFAMCIRCGACAM 316
           EE+C  C  CA+ CP G I +          K +TE            F+ CI CG C  
Sbjct: 59  EERCVACNLCAVACPVGCISL---------QKAETEDGRWYPDFFRINFSRCIFCGLCEE 109

Query: 317 KCPTGALKM 325
            CPT A+++
Sbjct: 110 ACPTTAIQL 118



 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 196 EEECIGCEKCVEACPGSMIEYNGEKL--GVKLPE-------ACPACGLCVESCPVEVISL 246
           EE C+ C  C  ACP   I     +   G   P+        C  CGLC E+CP   I L
Sbjct: 59  EERCVACNLCAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQL 118

Query: 247 EVEYASAKPVTDEGLVWSEEKCAYCGP 273
             ++  A+    + LV+ +E     GP
Sbjct: 119 TPDFEMAE-FKRQDLVYEKEDLLISGP 144



 Score = 39.7 bits (91), Expect = 7e-08
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 16/58 (27%)

Query: 8   EDACLVCNACAKACPTEAIEIAP----------------FKTCIQCFSCATACPTGAL 49
           E+ C+ CN CA ACP   I +                  F  CI C  C  ACPT A+
Sbjct: 59  EERCVACNLCAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAI 116



 Score = 39.7 bits (91), Expect = 7e-08
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 158 DKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIE 215
           ++C+ C +C+  CP   I +     +  +     F +N   CI C  C EACP + I+
Sbjct: 60  ERCVACNLCAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 21/99 (21%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVL 93
           C+ C  CA ACP G +                  + QKA     +   D F  +   C+ 
Sbjct: 62  CVACNLCAVACPVGCI------------------SLQKAETEDGRWYPDFFRINFSRCIF 103

Query: 94  CEKCVEICPAEIISLP---GKAEKPKKEIIIPQEPIAVT 129
           C  C E CP   I L      AE  +++++  +E + ++
Sbjct: 104 CGLCEEACPTTAIQLTPDFEMAEFKRQDLVYEKEDLLIS 142



 Score = 36.6 bits (83), Expect = 6e-07
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 83  RFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPEC 142
           R P  +  CV C  C   CP   ISL  KAE            I  ++ C+ CG+C   C
Sbjct: 54  RDPDGEERCVACNLCAVACPVGCISLQ-KAETEDGRWYPDFFRINFSR-CIFCGLCEEAC 111

Query: 143 PVDAISI 149
           P  AI +
Sbjct: 112 PTTAIQL 118



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 11  CLVCNACAKACPTEAIEIAP 30
           C+ C  C +ACPT AI++ P
Sbjct: 101 CIFCGLCEEACPTTAIQLTP 120