Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 220 a.a., Electron transport complex protein RnfB from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 53.5 bits (127), Expect = 6e-12
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 12/74 (16%)

Query: 152 IAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPG 211
           +AVID D CI CT+C Q CP +AI    K         +  TV E  C GCE C+  CP 
Sbjct: 76  VAVIDEDWCIGCTLCIQACPTDAILGIHK---------RMHTVVEPHCTGCELCLPVCPV 126

Query: 212 SMIE---YNGEKLG 222
             I     +GE+ G
Sbjct: 127 DCISLEIVSGERTG 140



 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLEV 248
           ++E+ CIGC  C++ACP   I    +++   +   C  C LC+  CPV+ ISLE+
Sbjct: 79  IDEDWCIGCTLCIQACPTDAILGIHKRMHTVVEPHCTGCELCLPVCPVDCISLEI 133



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 17/80 (21%)

Query: 74  PVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCV 133
           PV +  +D+ +      C+ C  C++ CP + I       K    ++ P         C 
Sbjct: 73  PVTVAVIDEDW------CIGCTLCIQACPTDAIL---GIHKRMHTVVEPH--------CT 115

Query: 134 ACGVCVPECPVDAISIEDIA 153
            C +C+P CPVD IS+E ++
Sbjct: 116 GCELCLPVCPVDCISLEIVS 135



 Score = 35.0 bits (79), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 6   IQEDACLVCNACAKACPTEAI-------EIAPFKTCIQCFSCATACPTGAL 49
           I ED C+ C  C +ACPT+AI              C  C  C   CP   +
Sbjct: 79  IDEDWCIGCTLCIQACPTDAILGIHKRMHTVVEPHCTGCELCLPVCPVDCI 129



 Score = 33.9 bits (76), Expect = 5e-06
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 27/75 (36%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVL 93
           CI C  C  ACPT A+                         +GI K        + HC  
Sbjct: 84  CIGCTLCIQACPTDAI-------------------------LGIHK--RMHTVVEPHCTG 116

Query: 94  CEKCVEICPAEIISL 108
           CE C+ +CP + ISL
Sbjct: 117 CELCLPVCPVDCISL 131



 Score = 30.8 bits (68), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 308 CIRCGACAMKCPTGA-LKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362
           CI C  C   CPT A L + K +H   E          C  C  C+ VCP   + L
Sbjct: 84  CIGCTLCIQACPTDAILGIHKRMHTVVE--------PHCTGCELCLPVCPVDCISL 131