Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH-quinone oxidoreductase subunit NuoI from Serratia liquefaciens MT49

 Score = 46.6 bits (109), Expect = 5e-10
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 308 CIRCGACAMKCPTGALKMGKMVHEG----KEYARVEFSPALCNECGECVDVCPQKTLELT 363
           C+ C  CA+ CP G + + K   +      E+ R+ FS   C  CG C + CP   ++LT
Sbjct: 60  CVACNLCAVACPVGCISLQKAEQKDGRWYPEFFRINFS--RCIFCGLCEEACPTTAIQLT 117

Query: 364 GDDKM 368
            D +M
Sbjct: 118 PDFEM 122



 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 99  EICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIE-------- 150
           ++ P E + LP +    +  I++ ++P    + CVAC +C   CPV  IS++        
Sbjct: 31  QMYPEEPVYLPPRY---RGRIVLTRDPDGEER-CVACNLCAVACPVGCISLQKAEQKDGR 86

Query: 151 ---DIAVIDTDKCIYCTVCSQTCPWNAI 175
              +   I+  +CI+C +C + CP  AI
Sbjct: 87  WYPEFFRINFSRCIFCGLCEEACPTTAI 114



 Score = 45.8 bits (107), Expect = 9e-10
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 196 EEECIGCEKCVEACPGSMIEYNG--EKLGVKLPE-------ACPACGLCVESCPVEVISL 246
           EE C+ C  C  ACP   I      +K G   PE        C  CGLC E+CP   I L
Sbjct: 57  EERCVACNLCAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQL 116

Query: 247 EVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANE 304
             ++   +    + LV+ +E     GP   K P          G+ +  K K E  NE
Sbjct: 117 TPDFEMGE-FKRQDLVYEKEDLLISGPG--KYP--EYNFYRMAGMAIDGKAKGEAENE 169



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 265 EEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALK 324
           EE+C  C  CA+ CP G I +   +  +     +  + N F+ CI CG C   CPT A++
Sbjct: 57  EERCVACNLCAVACPVGCISLQKAEQKDGRWYPEFFRIN-FSRCIFCGLCEEACPTTAIQ 115

Query: 325 M 325
           +
Sbjct: 116 L 116



 Score = 40.0 bits (92), Expect = 5e-08
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 158 DKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIE 215
           ++C+ C +C+  CP   I +     +  +   + F +N   CI C  C EACP + I+
Sbjct: 58  ERCVACNLCAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115



 Score = 39.7 bits (91), Expect = 7e-08
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 16/58 (27%)

Query: 8   EDACLVCNACAKACPTEAIEIAP----------------FKTCIQCFSCATACPTGAL 49
           E+ C+ CN CA ACP   I +                  F  CI C  C  ACPT A+
Sbjct: 57  EERCVACNLCAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 10/51 (19%)

Query: 34  CIQCFSCATACPTGALV-----EKDGKLV-----FNGSKCDLDGACQKACP 74
           C+ C  CA ACP G +      +KDG+        N S+C   G C++ACP
Sbjct: 60  CVACNLCAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACP 110



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 83  RFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPEC 142
           R P  +  CV C  C   CP   ISL  KAE+ K     P+        C+ CG+C   C
Sbjct: 52  RDPDGEERCVACNLCAVACPVGCISLQ-KAEQ-KDGRWYPEFFRINFSRCIFCGLCEEAC 109

Query: 143 PVDAISI 149
           P  AI +
Sbjct: 110 PTTAIQL 116



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 11  CLVCNACAKACPTEAIEIAP 30
           C+ C  C +ACPT AI++ P
Sbjct: 99  CIFCGLCEEACPTTAIQLTP 118