Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 192 a.a., Electron transport complex protein RnfB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246
           ++E  CIGC KC++ACP   I      +   + + C  C LCV+ CP   I L
Sbjct: 112 IDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIEL 164



 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 146 AISIEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKC 205
           A  +  +AVID + CI CT C Q CP +AI  A         T    TV  + C GC  C
Sbjct: 103 AAPVRMLAVIDENNCIGCTKCIQACPVDAIVGA---------TRAMHTVMSDLCTGCNLC 153

Query: 206 VEACPGSMIE 215
           V+ CP   IE
Sbjct: 154 VDPCPTHCIE 163



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 103 AEIISLPGKAEKPKKEIIIPQEPIAVTKD--CVACGVCVPECPVDAI--SIEDIAVIDTD 158
           AE++++  +    +++   P   +AV  +  C+ C  C+  CPVDAI  +   +  + +D
Sbjct: 86  AELLNVEPQPCDGEEQQAAPVRMLAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSD 145

Query: 159 KCIYCTVCSQTCPWNAI 175
            C  C +C   CP + I
Sbjct: 146 LCTGCNLCVDPCPTHCI 162



 Score = 40.4 bits (93), Expect = 4e-08
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 66  DGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEP 125
           DG  Q+A PV +  V D     + +C+ C KC++ CP + I    +A             
Sbjct: 97  DGEEQQAAPVRMLAVID-----ENNCIGCTKCIQACPVDAIVGATRAMH----------- 140

Query: 126 IAVTKDCVACGVCVPECPVDAISIEDI 152
             ++  C  C +CV  CP   I +  +
Sbjct: 141 TVMSDLCTGCNLCVDPCPTHCIELRPV 167



 Score = 35.8 bits (81), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 308 CIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTGDDK 367
           CI C  C   CP  A+        G   A       LC  C  CVD CP   +EL   ++
Sbjct: 117 CIGCTKCIQACPVDAIV-------GATRAMHTVMSDLCTGCNLCVDPCPTHCIELRPVNE 169

Query: 368 MP 369
            P
Sbjct: 170 TP 171



 Score = 32.7 bits (73), Expect = 9e-06
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 5   SIQEDACLVCNACAKACPTEAIEIAP 30
           ++  D C  CN C   CPT  IE+ P
Sbjct: 141 TVMSDLCTGCNLCVDPCPTHCIELRP 166



 Score = 30.8 bits (68), Expect = 3e-05
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 27/97 (27%)

Query: 19  KACPTEAIEIAPFKTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIK 78
           +A P   + +     CI C  C  ACP  A+V                GA +    V   
Sbjct: 102 QAAPVRMLAVIDENNCIGCTKCIQACPVDAIV----------------GATRAMHTV--- 142

Query: 79  KVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEKP 115
                       C  C  CV+ CP   I L    E P
Sbjct: 143 --------MSDLCTGCNLCVDPCPTHCIELRPVNETP 171



 Score = 23.9 bits (50), Expect = 0.004
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 374 CVMCLKCIEAC 384
           C+ C KCI+AC
Sbjct: 117 CIGCTKCIQAC 127