Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., formate hydrogenlyase complex iron-sulfur protein (NCBI) from Escherichia coli BW25113

 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 21/148 (14%)

Query: 226 PEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEE--KCAYCGPCAIKCPTGAI 283
           P+ C  C  CV +CP   +++E + A+ +      L W      C +CG C   CPT AI
Sbjct: 37  PQQCIGCAACVNACPSNALTVETDLATGE------LAWEFNLGHCIFCGRCEEVCPTAAI 90

Query: 284 KVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALK-----MGKMVHEGKEYA-- 336
           K+     L +  K+   + + FA+C  C  C    P    K     +  + H G   A  
Sbjct: 91  KLSQEYELAVWKKEDFLQQSRFALC-NCRVC--NRPFAVQKEIDYAIALLKHNGDSRAEN 147

Query: 337 -RVEFSPALCNECGECVDVCPQKTLELT 363
            R  F    C EC     + P   +ELT
Sbjct: 148 HRESFE--TCPECKRQKCLVPSDRIELT 173



 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 195 NEEECIGCEKCVEACPGSMIEYNGEKLGVKLP-----EACPACGLCVESCPVEVISLEVE 249
           N ++CIGC  CV ACP + +    +    +L        C  CG C E CP   I L  E
Sbjct: 36  NPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQE 95

Query: 250 YASAKPVTDEGLVWSEEKCAYCGPC 274
           Y  A    ++ L  S      C  C
Sbjct: 96  YELAVWKKEDFLQQSRFALCNCRVC 120



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 18/72 (25%)

Query: 122 PQEPIAVTKD-----------CVACGVCVPECPVDAISIE-DIAV------IDTDKCIYC 163
           P EPIAV K+           C+ C  CV  CP +A+++E D+A        +   CI+C
Sbjct: 19  PLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFC 78

Query: 164 TVCSQTCPWNAI 175
             C + CP  AI
Sbjct: 79  GRCEEVCPTAAI 90



 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 36/111 (32%)

Query: 34  CIQCFSCATACPTGAL-VEKD---GKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKG 89
           CI C +C  ACP+ AL VE D   G+L +                           ++ G
Sbjct: 40  CIGCAACVNACPSNALTVETDLATGELAWE--------------------------FNLG 73

Query: 90  HCVLCEKCVEICPAEIISLPGKAEKP--KKEIIIPQEPIAVTKDCVACGVC 138
           HC+ C +C E+CP   I L  + E    KKE  + Q   A+      C VC
Sbjct: 74  HCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCN----CRVC 120



 Score = 38.5 bits (88), Expect = 1e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 130 KDCVACGVCVPECPVDAISIEDI----AVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKR 185
           K  +  G      P++ I+++         +  +CI C  C   CP NA+ V   L    
Sbjct: 6   KKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGE 65

Query: 186 QKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGE 219
                ++  N   CI C +C E CP + I+ + E
Sbjct: 66  ----LAWEFNLGHCIFCGRCEEVCPTAAIKLSQE 95



 Score = 35.8 bits (81), Expect = 1e-06
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 11  CLVCNACAKACPTEAIEIAPFKTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQ 70
           C+ C AC  ACP+ A+ +             T   TG L  +     FN   C   G C+
Sbjct: 40  CIGCAACVNACPSNALTV------------ETDLATGELAWE-----FNLGHCIFCGRCE 82

Query: 71  KACPVGIKKVDDRFPYS--KGHCVLCEKCVEICPAEIISLPGKAEK 114
           + CP    K+   +  +  K    L +    +C   + + P   +K
Sbjct: 83  EVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQK 128



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 339 EFSPALCNECGECVDVCPQKTLEL-----TGDDKMPLK-GYCVMCLKCIEAC 384
           E +P  C  C  CV+ CP   L +     TG+       G+C+ C +C E C
Sbjct: 34  EQNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVC 85