Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 193 a.a., Nitrogen fixation protein rnfB from Alteromonas macleodii MIT1002

 Score = 56.2 bits (134), Expect = 7e-13
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246
           + E+ECIGC KC++ACP   I    + +   + + C  C LCV+ CPV+ I +
Sbjct: 113 IREDECIGCTKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCIDM 165



 Score = 52.8 bits (125), Expect = 8e-12
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 13/77 (16%)

Query: 143 PVDAI----SIEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEE 198
           P+DA      ++ +A I  D+CI CT C Q CP +AI  A K            TV  +E
Sbjct: 97  PLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAILGAAK---------HMHTVITDE 147

Query: 199 CIGCEKCVEACPGSMIE 215
           C GC+ CV+ CP   I+
Sbjct: 148 CTGCDLCVDPCPVDCID 164



 Score = 43.1 bits (100), Expect = 6e-09
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 91  CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIE 150
           C+ C KC++ CP + I    K                +T +C  C +CV  CPVD I + 
Sbjct: 118 CIGCTKCIQACPVDAILGAAK-----------HMHTVITDECTGCDLCVDPCPVDCIDMV 166

Query: 151 DIA 153
            IA
Sbjct: 167 PIA 169



 Score = 42.7 bits (99), Expect = 8e-09
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 131 DCVACGVCVPECPVDAI--SIEDIAVIDTDKCIYCTVCSQTCPWNAI 175
           +C+ C  C+  CPVDAI  + + +  + TD+C  C +C   CP + I
Sbjct: 117 ECIGCTKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCI 163



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 180 KLPQKRQKTIKSFTVNEEECIGCE-KCVEACPGSMIEYNGEKLGVKLPEACPACGLCVES 238
           K P   + TIK       + +G E K ++A  G   E + +K+     + C  C  C+++
Sbjct: 75  KCPPGGEATIKKLA----DLMGVEPKPLDAAHG---EEDVKKVAFIREDECIGCTKCIQA 127

Query: 239 CPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVV 286
           CPV+ I    ++     +TDE        C  C  C   CP   I +V
Sbjct: 128 CPVDAILGAAKHMHT-VITDE--------CTGCDLCVDPCPVDCIDMV 166



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 6   IQEDACLVCNACAKACPTEAI-------EIAPFKTCIQCFSCATACPTGAL 49
           I+ED C+ C  C +ACP +AI              C  C  C   CP   +
Sbjct: 113 IREDECIGCTKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCI 163



 Score = 32.0 bits (71), Expect = 1e-05
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 19/98 (19%)

Query: 277 KCPTGA---------IKVVNPKGLELPSKKKTEKANEFAM---CIRCGACAMKCPTGALK 324
           KCP G          +  V PK L+    ++  K   F     CI C  C   CP  A+ 
Sbjct: 75  KCPPGGEATIKKLADLMGVEPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAI- 133

Query: 325 MGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362
           +G   H              C  C  CVD CP   +++
Sbjct: 134 LGAAKHMHTVITDE------CTGCDLCVDPCPVDCIDM 165



 Score = 26.9 bits (58), Expect = 5e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 9   DACLVCNACAKACPTEAIEIAP 30
           D C  C+ C   CP + I++ P
Sbjct: 146 DECTGCDLCVDPCPVDCIDMVP 167



 Score = 26.6 bits (57), Expect = 6e-04
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 27/75 (36%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVL 93
           CI C  C  ACP  A++                GA +    V    + D        C  
Sbjct: 118 CIGCTKCIQACPVDAIL----------------GAAKHMHTV----ITD-------ECTG 150

Query: 94  CEKCVEICPAEIISL 108
           C+ CV+ CP + I +
Sbjct: 151 CDLCVDPCPVDCIDM 165



 Score = 23.9 bits (50), Expect = 0.004
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 374 CVMCLKCIEAC 384
           C+ C KCI+AC
Sbjct: 118 CIGCTKCIQAC 128