Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 368 a.a., tRNA pseudouridine synthase B from Xanthobacter sp. DMC5

 Score =  102 bits (255), Expect = 1e-26
 Identities = 74/241 (30%), Positives = 108/241 (44%), Gaps = 40/241 (16%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G V++DKP+G TS +  A V+ +    KAGH GTLDP  +G LP+A G  TK VP     
Sbjct: 60  GWVLLDKPTGMTSTQAVAVVKRIFGAKKAGHAGTLDPLASGCLPIAFGEATKTVPYVMDG 119

Query: 91  PKEYVCLMHL-----HDDAELVDIEN------------IFKEFTGRIHQRPPLKAA---- 129
            K Y   +        DD+E   +E                 F G I Q PP  +A    
Sbjct: 120 RKTYRFTVRFGVETDTDDSEGKAVETSDLRPSDDEIIAALPTFRGEIMQVPPAYSALKIG 179

Query: 130 -------------VKRSLRIRKIYEIEILE-IDGRDILFRTKCQSGTYLRKLVDDMGEAL 175
                        VK   R   I+ I+++E  D    +   +C  GTY+R +  D+G  L
Sbjct: 180 GERAYDLAREGEEVKLEARPVTIFRIDLVERPDADHAVLEAECGKGTYVRAIARDLGRML 239

Query: 176 GTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKK 235
           G+  H+ +LRR   GPF E   V L +L D     + + +EE L   + P+   L+ + +
Sbjct: 240 GSRGHICQLRRACVGPFLEERLVPLDELRD-----RAEASEEALMDALDPVAVALEEIPQ 294

Query: 236 I 236
           +
Sbjct: 295 L 295