Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 305 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  113 bits (282), Expect = 7e-30
 Identities = 80/235 (34%), Positives = 111/235 (47%), Gaps = 38/235 (16%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G++++DKP G TS+     VR +LN  KAGH G+LDP  TG LP+  G  TK       
Sbjct: 12  SGIILLDKPIGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLD 71

Query: 90  PPKEYVCLMHLHD-----DAE------------LVDIENIFKEFTGRIHQRPPLKAAVKR 132
             K Y  LM L       DAE              DIE +   F G I Q PP+ +A+KR
Sbjct: 72  SDKGYETLMQLGKTTTTADAEGDVLQVRDVTVGRADIEAVLPGFRGEISQIPPMYSALKR 131

Query: 133 S-----------------LRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEAL 175
                              R   I  +E+L  +G        C  GTY+R LV+D+GE L
Sbjct: 132 DGQPLYKLARAGEVVEREPRSVTIARLELLACEGDTARLAVDCSKGTYIRTLVEDIGEKL 191

Query: 176 GTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGL 230
           G  A++ ELRRT +GPF   + V L++L   +     +G  E + + + P + GL
Sbjct: 192 GCGAYVAELRRTQAGPFSLAQTVTLEELEAVH----AEGGNEAVDRFLMPSDSGL 242