Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

 Score =  123 bits (308), Expect = 7e-33
 Identities = 85/254 (33%), Positives = 121/254 (47%), Gaps = 38/254 (14%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G++++DKP G TS+     VR +LN  KAGH G+LDP  TG LP+  G  TK       
Sbjct: 12  SGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLD 71

Query: 90  PPKEYVCLMHLHD-----DAE------------LVDIENIFKEFTGRIHQRPPLKAAVKR 132
             K Y  +M +       DAE              DIE +   F G I Q PP+ +A+KR
Sbjct: 72  SDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYSALKR 131

Query: 133 S-----------------LRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEAL 175
                              R   I  +E+LE +G        C  GTY+R LV+D+GEAL
Sbjct: 132 DGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDIGEAL 191

Query: 176 GTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKK 235
           G  A++ ELRRT +GPF   + V L++L  A+     +G  E L + + P + GLQ    
Sbjct: 192 GCGAYVAELRRTQAGPFALAQTVTLEELEQAH----AEGGNEALDRFLMPSDSGLQDWPL 247

Query: 236 IIIKDSAVDAVCHG 249
           + + + +     HG
Sbjct: 248 VSLSEHSAFYWLHG 261