Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 331 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 46/235 (19%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G++++DKP G +S++     + +L   KAGH GTLDP  +G LP+  G  TK   I    
Sbjct: 15  GVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLASGVLPLCFGAATKFSQIHLDA 74

Query: 91  PKEYVCLMHL-------HDDAELVD----------IENIFKEFTGRIHQRPPLKAAVK-- 131
            K Y  ++ L         + E++D          +  +   FTG I Q PP+ +A+K  
Sbjct: 75  DKTYETVVRLGVKTSTGDAEGEVIDTRAVNCSVGQVVEVLDRFTGPIAQVPPMHSALKKD 134

Query: 132 ---------------RSLRIRKIYEIEILEI----DGRDILFRTKCQSGTYLRKLVDDMG 172
                          R  R   I+++E+L++    D   +  R +C  GTY+R L +D+G
Sbjct: 135 GKALYEYARDGETVEREARHVVIHDLELLDMQLQGDAPQLRLRVRCSKGTYIRTLGEDIG 194

Query: 173 EALGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLE 227
           EALG   H+  LRR  +GPF  ++ V L  L        E  NEE+ +  + P++
Sbjct: 195 EALGCGGHLILLRRIATGPFDLSQCVSLAAL--------EALNEEDRQARLLPVQ 241