Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 308 a.a., tRNA pseudouridine 55 synthase from Kangiella aquimarina DSM 16071

 Score =  102 bits (254), Expect = 1e-26
 Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 38/262 (14%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           TG++++DKP+  TS++     + +    KAGH G LDP  TG LP+  G  TK       
Sbjct: 12  TGILLLDKPTDITSNKALQQAKFLYFAAKAGHTGALDPIATGVLPICFGEATKFSQYLLN 71

Query: 90  PPKEYVCLMHLHDDAELVDIEN-----------------IFKEFTGRIHQRPPLKAAVK- 131
             K+Y     L +     D E                  + ++F G I Q P + +A+K 
Sbjct: 72  ADKKYRVTAKLGEKTTTADREGEVIESKPVDVTEEQLVKVLQQFKGTISQVPSMYSALKK 131

Query: 132 ----------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEAL 175
                           R  R   IY +E++     + +    C  GTY+R LV+D+G+ L
Sbjct: 132 DGVPLYKLARKGIEVERDAREVDIYSLELVTFSDDEFVLDVHCSKGTYVRNLVEDIGDEL 191

Query: 176 GTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKK 235
           G  AH+ ELRRT  G F   + V L  L +     K+   + E+ +++ P+E  L H+  
Sbjct: 192 GCGAHVLELRRTAVGDFNLGQTVTLAHLEEL----KQVDAKLEMDELLLPVEQALSHMPL 247

Query: 236 IIIKDSAVDAVCHGATLYSSGI 257
           + + D     +  G  +  +G+
Sbjct: 248 VQLTDDEAYYIRLGQAVQIAGV 269