Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 324 a.a., tRNA pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score =  101 bits (251), Expect = 3e-26
 Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 36/314 (11%)

Query: 31  GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90
           G+V++DKP G +S+++   VR +    KAGH G LDP  +G LP+ LG  TK        
Sbjct: 12  GIVLLDKPLGGSSNQLLQKVRWLYKAAKAGHTGALDPLASGMLPLCLGEATKFSQFLLDA 71

Query: 91  PKEYVCLMHL-------HDDAELVD----------IENIFKEFTGRIHQRPPLKAAVK-- 131
            K Y     L         D E+V+          + +    F G+  Q P + +A+K  
Sbjct: 72  EKTYEVTAQLGVRTTTSDADGEVVEEKPVDVSEEQVRDACLAFLGKSKQIPSMFSALKHQ 131

Query: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176
                          R  R  ++YE+++L I+   +  R KC  GTY+R +VDD+G+ LG
Sbjct: 132 GKPLYHYARQGIEIEREPRDIEVYELDVLRIELPFVEMRIKCSKGTYIRSIVDDLGQNLG 191

Query: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQHLKKI 236
             A++  L RT    +  ++ V L  L++      EDG+ + L  ++ P++  +  L  +
Sbjct: 192 CGAYVTRLHRTEVADYPTDKMVSLDKLIEIQES-LEDGDFKALDDLLIPMDTAVSRLPFV 250

Query: 237 IIKDSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGKPLMNTKDMLKTE 296
            I D+  +   +G ++  +    + +G+ +  V   +   G  + VG+ +++ KD    +
Sbjct: 251 TINDAERNRFDNGQSVKGTCSEALGEGV-SYRVYHGDDTSGVFLGVGEGVLDPKDQGIPK 309

Query: 297 EGEVVEITRVIMEP 310
           +   V   R ++ P
Sbjct: 310 QEVFVNPKRRVVYP 323