Pairwise Alignments

Query, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

Subject, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

 Score =  101 bits (252), Expect = 2e-26
 Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 44/292 (15%)

Query: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89
           +G +++DKP    S E  + ++ + N  KAGH GTLDP  +G LP+ALG+ TK VP    
Sbjct: 18  SGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGMLPIALGDATKTVPYVMD 77

Query: 90  PPKEYVCLMHLHD-------DAELVD----------IENIFKEFTGRIHQRPPLKAAVKR 132
             K Y   +   +       + E+V+          I +I   +TG I Q PP  +A+K 
Sbjct: 78  GRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPNYTGVIMQTPPQFSAIK- 136

Query: 133 SLRIRKIYEI----EILEIDGRDI----------------LFRTKCQSGTYLRKLVDDMG 172
            +   + Y++    E +EI  R++                 F  +C  GTY+R L  DMG
Sbjct: 137 -IAGERAYDLARDGETVEIPAREVEIHRLTLLACPDADTAHFEVECGKGTYVRALARDMG 195

Query: 173 EALGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQH 232
             LG   H+ ELRRT+  PF E+  V L+ L         D   E L   +      L  
Sbjct: 196 RDLGCFGHISELRRTMVAPFGEDMMVPLETLTALEAIEDRDERLEALDAFLIDTAEALSS 255

Query: 233 LKKIIIKDSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGK 284
           L ++II D     +  G  +   G     +    +      T +G+ VA+G+
Sbjct: 256 LPRLIINDDQAHRLKMGNPILLRG-----RDAPANHPEAYATAQGKLVAIGE 302