Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 345 a.a., Conjugative transfer protein TrbB from Variovorax sp. SCN45

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 16/210 (7%)

Query: 207 EGDISNYLKNMCERIGRPVSDATPIVDGSLPD-GSRINILYSGDVSLKGPSFTIRKFTDV 265
           E D    ++ +   +G  V    P++   LP+ G R   +     +  GP+F +RK    
Sbjct: 66  EADGERIIRLVAAHVGTEVHRGQPLLTAELPETGERFEGILPP--AAPGPAFALRKRAFG 123

Query: 266 PISITQIISWGTMSAQTAAYLWLCLEYGMSIFICGETASGKTTSLNAILPFIKPK-SKIF 324
            I +++ I  G M+A  A  L   +    +I I G T++GKTT  NA+L  I     ++ 
Sbjct: 124 VIPLSRYIEDGMMTAAQAGLLVRAVRERQNILIAGGTSTGKTTLANALLAEIAATGDRVL 183

Query: 325 SCEDTSEVKPPNPVWQQLLTRERGPEESR---VTLFDLLRAALRSRPNYIIVGEIRSVEG 381
             EDT E+        Q   R+  P  +R   V++ +L+R+++R RP+ +IVGE+R  E 
Sbjct: 184 VLEDTVEL--------QCAARDHVPLRTRQGVVSMTELVRSSMRLRPDRVIVGEVRGAEA 235

Query: 382 AVAFQAMQTGHP-VISTFHAANVRKMIQRL 410
               +   TGHP  I+T HA +    + RL
Sbjct: 236 LDLIKVWGTGHPGGIATIHAGSALGALLRL 265