Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 354 a.a., Conjugative transfer protein TrbB from Variovorax sp. SCN45

 Score = 82.4 bits (202), Expect = 3e-20
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 29/267 (10%)

Query: 207 EGDISNYLKNMCERIGRPVSDATPIVDGSLPD-GSRINILYSGDVSLKGPSFTIRKFTDV 265
           E D    ++ +   +G  V    P++   LP+ G R   +     +  GP+F +RK    
Sbjct: 66  EADGERIIRLVAAHVGAEVHRGQPLLSAELPETGERFEGILPP--AAPGPAFALRKRAIG 123

Query: 266 PISITQIISWGTMSAQTAAYLWLCLEYGMSIFICGETASGKTTSLNAILPFIKPK-SKIF 324
            I + + +  G M+A  A +L   +    ++ I G T+SGKTT  NA+L  I     ++ 
Sbjct: 124 VIPLERYVVEGMMTAAQAGFLVRAVRERQNVLIAGATSSGKTTLANALLAEIAATGDRVL 183

Query: 325 SCEDTSEVKPPNPVWQQLLTRERGPEESR---VTLFDLLRAALRSRPNYIIVGEIRSVEG 381
             EDT E+        Q   R+  P  +R   V++  L+R+++R RP+ ++VGE+R  E 
Sbjct: 184 VLEDTIEL--------QCAARDHVPLRTRSGVVSMTQLVRSSMRLRPDRVVVGEVRGAEA 235

Query: 382 AVAFQAMQTGHP-VISTFHAAN----VRKMIQRLTGDPICIPQTFM-DNLNVCLFQLAVY 435
               +   TGHP  I+T HA +    + +M Q +    +  P+  + + +NV +    + 
Sbjct: 236 LDLIKVWGTGHPGGIATIHAGSALGALLRMEQLILEVAVNPPRALIAEAVNVVIH---IA 292

Query: 436 ARGKFLRRVVSVEEIEGY----YKEVD 458
            RG+  RR+ S+  + G+    Y+ VD
Sbjct: 293 GRGR-KRRIESIARVVGFDGVGYRLVD 318