Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 462 a.a., CpaF family protein from Magnetospirillum magneticum AMB-1

 Score =  147 bits (370), Expect = 1e-39
 Identities = 102/293 (34%), Positives = 155/293 (52%), Gaps = 14/293 (4%)

Query: 125 SQKNEKKKGILSKITDSGKININKSERDKFLYLLKRDLIGLGTLEPIKRDPYIEDIHVIG 184
           +Q  E+   I+++I     + I+ +E+   +  +  D++GLG LEP+     I DI V G
Sbjct: 69  AQVREEISDIVAEIISMRNLVISAAEQQVVIADICNDVLGLGPLEPLIARDDIADIMVNG 128

Query: 185 AKNCQLVHKIYDMLPSNIEWEDEGDISN-YLKNMCERI----GRPVSDATPIVDGSLPDG 239
           A       K+Y      IE  D     N  L N+C+RI    GR V +++PI D  L DG
Sbjct: 129 AG------KVYIETEGRIELTDIKFRDNAQLMNICQRIVAAVGRRVDESSPICDARLADG 182

Query: 240 SRINILYSGDVSLKGPSFTIRKFTDVPISITQIISWGTMSAQTAAYLWLCLEYGMSIFIC 299
           SR+N++    +++ GP+ TIRKF    +++ +++ +G++SA  A  L +      +I I 
Sbjct: 183 SRVNVIVP-PLAIDGPTLTIRKFKREKLTLEKLVEFGSLSAPAARVLQIASAVRCNILIS 241

Query: 300 GETASGKTTSLNAILPFIKPKSKIFSCEDTSEVKPPNPVWQQLLTRERGPE-ESRVTLFD 358
           G T SGKTT LN +  +I    +I +CED +E++   P   +L TR    E    VT+ D
Sbjct: 242 GGTGSGKTTLLNCMTRYIDQTERIVTCEDAAELQLQQPHVVRLETRPPNLEGAGAVTMRD 301

Query: 359 LLRAALRSRPNYIIVGEIRSVEGAVAFQAMQTGHP-VISTFHAANVRKMIQRL 410
           L++  LR RP  IIVGE+R  E     QAM TGH   + T HA   R  + R+
Sbjct: 302 LVKNCLRMRPERIIVGEVRGPEAFDLLQAMNTGHDGSMGTIHANTPRDALSRV 354