Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 344 a.a., component of type IV secretion system from Agrobacterium fabrum C58

 Score = 80.9 bits (198), Expect = 7e-20
 Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 26/204 (12%)

Query: 225 VSDATPIVDGSLPDGSRINILYSGDVSLKGPSFTIRKFTDVPISITQIIS------WGTM 278
           V    P+    LPDG R+ I     V     S TIR+ +    S+ ++ S      W   
Sbjct: 69  VGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQW 128

Query: 279 -------------------SAQTAAYLWLCLEYGMSIFICGETASGKTTSLNAILPFIKP 319
                              +    A+L  C+   +++ +CG T SGKTT    ++  I P
Sbjct: 129 KERKKRHDQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPP 188

Query: 320 KSKIFSCEDTSEVKPPNPVWQQLLTRERGPEESRVTLFDLLRAALRSRPNYIIVGEIRSV 379
           + ++ + EDT E+  P+    +LL  + G     VT   LL+A+LR RP+ I++GEIR  
Sbjct: 189 QERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDD 248

Query: 380 EGAVAFQAMQTGHP-VISTFHAAN 402
                   + +GHP  IST H AN
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGAN 272