Pairwise Alignments

Query, 546 a.a., type II/IV secretion system ATPase subunit from Methanococcus maripaludis S2

Subject, 491 a.a., component of type IV pilus from Agrobacterium fabrum C58

 Score =  148 bits (374), Expect = 4e-40
 Identities = 92/294 (31%), Positives = 162/294 (55%), Gaps = 5/294 (1%)

Query: 120 VAKVSSQK-NEKKKGILSKITDSGKININKSERDKFLYLLKRDLIGLGTLEPIKRDPYIE 178
           +AK+ ++   E+ + I++ I       ++ +E+++ L  +  D++G G LEP+     I 
Sbjct: 89  LAKLDAESAREEIRDIVNDIITIKNFAMSIAEQEELLEDICNDVLGYGPLEPLLARDDIA 148

Query: 179 DIHVIGAKNCQLVHKIYDMLPSNIEWEDEGDISNYLKNMCERIGRPVSDATPIVDGSLPD 238
           DI V G+     +      + S+I + D   + +  + +  ++GR V +++PI D  LPD
Sbjct: 149 DIMVNGSGQT-FIEVGGKTIESDIRFRDNAQLLSICQRIVSQVGRRVDESSPICDARLPD 207

Query: 239 GSRINILYSGDVSLKGPSFTIRKFTDVPISITQIISWGTMSAQTAAYLWLCLEYGMSIFI 298
           GSR+N++ +  +++ GP+ TIRKF    +++ Q++ +G ++ + A  L +      ++ I
Sbjct: 208 GSRVNVI-APPLAIDGPALTIRKFKRDKLTLDQLVRFGAITPEGATLLKIIGRVRCNVVI 266

Query: 299 CGETASGKTTSLNAILPFIKPKSKIFSCEDTSEVKPPNPVWQQLLTRERGPE-ESRVTLF 357
            G T SGKTT LN +  FI    ++ +CEDT+E++   P   +L TR    E E  +T+ 
Sbjct: 267 SGGTGSGKTTLLNCLTSFIDKDERVITCEDTAELQLQQPHVVRLETRPPNIEGEGEITMR 326

Query: 358 DLLRAALRSRPNYIIVGEIRSVEGAVAFQAMQTGHP-VISTFHAANVRKMIQRL 410
           DL++  LR RP  I+VGE+R  E     QAM TGH   + T HA   R+ + R+
Sbjct: 327 DLVKNCLRMRPERIVVGEVRGPEVFDLLQAMNTGHDGSMGTLHANTPRECLSRI 380