Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 636 a.a., ATP-dependent metalloprotease from Pseudomonas simiae WCS417

 Score =  216 bits (551), Expect = 1e-60
 Identities = 118/264 (44%), Positives = 168/264 (63%), Gaps = 4/264 (1%)

Query: 140 EEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLA 199
           E++   +  D+ G +    ++ E+VE  L++P  F+++G   P+GVL+ GPPGTGKTLLA
Sbjct: 146 EDQVKTTLADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKTLLA 204

Query: 200 KAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTE 259
           KA+A E    F  + GS+ V+ F+G GA  VRD+F+ AK+ +PCIIFIDEIDAV   R  
Sbjct: 205 KAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGA 264

Query: 260 SLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMP 319
            + GG  E ++TL QLL EMDGF+    + +IAATNRPD+LDPA+LRPGRFDR + + +P
Sbjct: 265 GMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 324

Query: 320 DEDGRLEILKIHTEKMNLKGVDLRE--VAKIAENMVGADLKAVCTEAGMFAIREEREFIK 377
           D  GR +ILK+H  K+ + G D+    +A+      GADL  +  EA +FA R  +  ++
Sbjct: 325 DIRGREQILKVHMRKVPM-GDDVAPAVIARGTPGFSGADLANLVNEASLFAARTGKRIVE 383

Query: 378 MDDFREAISKITGKKEKCSYDMPQ 401
           M +F  A  KI    E+ S  M +
Sbjct: 384 MKEFELAKDKIMMGAERKSMVMSE 407