Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 774 a.a., ATPase, AAA family from Variovorax sp. SCN45

 Score = 50.1 bits (118), Expect = 2e-10
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 188 YGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFI 247
           YG PGTGKT LA+ +A       +    S+L+ K++GE  + +  +F+ A E    ++ +
Sbjct: 570 YGAPGTGKTALAEHIAKALGRPLLVKQASDLMSKYVGETEQNMAAMFREA-ENEKAVLLL 628

Query: 248 DEIDAVASKRTESLTGGDREVQRT-LMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILR 306
           DE D+    R     G  R  + T + ++L  M+ F+       +  TN  D LD A LR
Sbjct: 629 DEADSFLQDR----RGAQRTYEVTEVNEMLQGMERFNG----VFVCTTNLLDRLDQAALR 680



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 33/205 (16%)

Query: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIG--EGAKLVRDVFKLAK 238
           P   VLLYGPPGTGKT LAK VA         V  ++     +   +  + ++      K
Sbjct: 310 PGVNVLLYGPPGTGKTELAKVVAQAAGLELFEVEYADRDGNSLSGRDRYRSLQIAQVFLK 369

Query: 239 EKSPCIIFIDEIDAV-------------ASKRTESLTGGDREVQRTLMQLLAEMDGFDSR 285
             +   +  DE++ V              +++  + T G    +  + Q+L         
Sbjct: 370 GSAQAALLFDEVEDVFPPISTEAAQFMARAEQIPAPTSGSVSGKAWVNQIL-------EA 422

Query: 286 GDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKGVDLRE- 344
             V  +  TNR + +DPA  R  RF   +E+  P    R +++     K  L+GV + E 
Sbjct: 423 NPVPTLWVTNRIEQIDPAFRR--RFAYHLELKSPPPGAREQLV-----KKTLEGVVVSEA 475

Query: 345 -VAKIAE--NMVGADLKAVCTEAGM 366
             AK+AE   +  A ++     AG+
Sbjct: 476 FTAKLAERKGLTPAQIRTAVRFAGL 500