Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

 Score =  220 bits (560), Expect = 1e-61
 Identities = 129/290 (44%), Positives = 182/290 (62%), Gaps = 22/290 (7%)

Query: 100 QFVDPEDIVPGAR-------VCLNQQTLAIVEVLPK---------EKDYRAMAMEIEE-- 141
           Q V P D+ P  R         L +  L +V  +PK         E + RA   E  E  
Sbjct: 141 QQVPPGDMPPHLRQMLAAPAYALQEIRLIVVSTVPKGIVHIDAETEVELRAEYEEPRESR 200

Query: 142 KPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKA 201
           + D++++D+GG+   I  ++E+VELPL+ PELFE++G+ PPKGV+L+GPPGTGKT LA+A
Sbjct: 201 RADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTRLARA 260

Query: 202 VAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESL 261
           VA E+ A F  + G E++    GE  K +RD+F+ A + +P I+FIDEID++A KR +  
Sbjct: 261 VANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKRGQ-- 318

Query: 262 TGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDE 321
             G+ E +R + QLL  MDG + R ++ +IAATNRP+ +D A+ RPGRFDR I + +PDE
Sbjct: 319 VTGETE-KRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDE 377

Query: 322 DGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIR 370
            GR EIL IHT  M L   VDL E+A++    VGADL A+  EA +  +R
Sbjct: 378 RGRREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAIETVR 427



 Score =  219 bits (559), Expect = 2e-61
 Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 14/316 (4%)

Query: 96  VNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNN 155
           +NL +   P D++    V       AI  V P      AM   + + P+I + DIGGL++
Sbjct: 433 LNLEEGTIPPDVLEDLSVTREDFLSAIKRVQPS-----AMREVMVQAPNIGWADIGGLDD 487

Query: 156 QIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVG 215
               +KE VELPLK+P+ F ++GI P KG LLYGPPGTGKTLLAKAVA E  A+F+    
Sbjct: 488 AQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIATKS 547

Query: 216 SELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQL 275
           S+L+ K+ GE  + +  +F  A++ +P +IFIDE+D++   R   L G     +R +  +
Sbjct: 548 SDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGL-GEPAVTERVVNTI 606

Query: 276 LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKM 335
           LAEMDG +    V +I ATNRP ++DPA+LRPGRFD +I + +PD+ GR  IL IHT+KM
Sbjct: 607 LAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILAIHTKKM 666

Query: 336 NL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIRE--EREFIKMDDFREAI----SKI 388
            L   VDL ++A   E   GADL+ +   AG+ A+R+  + E + M  F  A+    + +
Sbjct: 667 PLASDVDLDQLAARTERFTGADLEDLSRRAGLIALRQSLQVEAVTMAHFEAALEETRASV 726

Query: 389 TGKKEKCSYDMPQLTV 404
           T + E+  Y+  Q T+
Sbjct: 727 TPEMER-EYEQIQATL 741