Pairwise Alignments

Query, 407 a.a., proteasome-activating nucleotidase from Methanococcus maripaludis S2

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  250 bits (639), Expect = 9e-71
 Identities = 153/386 (39%), Positives = 233/386 (60%), Gaps = 27/386 (6%)

Query: 18  LKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILD 77
           L E   +   +++ES V  +E  + +   E  +I K+ E+   +  K+++  L++  + D
Sbjct: 376 LNELVGEYDRSKIESLVKLVEKASSE--EEIEKILKDGEV--EDKVKVKLNQLMVKELAD 431

Query: 78  KVN----------ERKAVVKSSTGPNFL--VNLSQFVDPEDIVPGARVCLNQQTLAIVEV 125
           K +           ++A +K  T   FL  ++L +   P +++   +V        + EV
Sbjct: 432 KTHGFAGADLAALSKEAAMK--TLRRFLPDIDLEKEEIPREVLDKIKVTKEDFVGGLKEV 489

Query: 126 LPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGV 185
            P      A+   + E P+I + D+GGL +  +D+KE VE P+KN E+FE++GI PPKGV
Sbjct: 490 EPS-----ALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGV 544

Query: 186 LLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCII 245
           LL+GPPGTGKTLLAKAVA E+ A+F+ V G E+  K++GE  K +R++F+ A++ +P +I
Sbjct: 545 LLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVI 604

Query: 246 FIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAIL 305
           F DEID+VA KR     G     ++ + QLL E+DG +   DV IIAATNRPDILD A+L
Sbjct: 605 FFDEIDSVAPKRGMDF-GSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALL 663

Query: 306 RPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEA 364
           RPGR DRI+ + +P+E  RLEI K+HT+ M + K V+L ++AK  +   GAD++AVC EA
Sbjct: 664 RPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREA 723

Query: 365 GMFAIRE--EREFIKMDDFREAISKI 388
            M A+RE    E ++   F  A  +I
Sbjct: 724 AMIALRENINSEHVESRHFDGAFKRI 749



 Score =  220 bits (561), Expect = 1e-61
 Identities = 116/213 (54%), Positives = 155/213 (72%), Gaps = 4/213 (1%)

Query: 143 PDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAV 202
           P++++EDIGGL  +++ I+E+VELP++ PELF+K+GI PPKGVLL GPPGTGKTLLAKAV
Sbjct: 172 PNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAV 231

Query: 203 AYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLT 262
           A E  A+F  + G E++ K++GE  + +R +F+ A+E SP IIFIDEIDAVA KR E+  
Sbjct: 232 ANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEA-- 289

Query: 263 GGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDED 322
            G+ E +R + QLL  MDG +SRG + I+AATNRPD +D A+ RPGR DR I I +PD  
Sbjct: 290 SGEVE-RRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRH 348

Query: 323 GRLEILKIHTEKMNLK-GVDLREVAKIAENMVG 354
           GR EIL+IHT  M L+   +  +V  I   +VG
Sbjct: 349 GRNEILQIHTRNMPLQPDYEKSDVISILNELVG 381



 Score = 25.8 bits (55), Expect = 0.005
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 195 KTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLA 237
           K  LA   A   +  F   VGS LV++ + +G+K+V  V   A
Sbjct: 92  KITLAPMQAVRFSTGFESYVGSRLVEQVVDKGSKVVIGVLGTA 134