Pairwise Alignments

Query, 482 a.a., energy conserving hydrogenase EhbF from Methanococcus maripaludis S2

Subject, 495 a.a., NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) from Variovorax sp. SCN45

 Score =  107 bits (266), Expect = 1e-27
 Identities = 81/345 (23%), Positives = 159/345 (46%), Gaps = 21/345 (6%)

Query: 95  EKKSSGLFVALMLMGLASVSAVVMADDLFNIYVFYEIAAIAQTGLV-IASGTEKAYRSAF 153
           E    G    + +  L  +  ++   +   IY+  E+  ++   LV +      A  +A 
Sbjct: 102 EMLRGGELFTVSMFALLGMFVMISGSNFLLIYLGLELLTLSSYALVALRRDNAVASEAAM 161

Query: 154 RYLILGNFAGSILLLGVSMLLAATGTLNITDMHNFLLNNPAT-PTIYGGLLMLIIGLCYG 212
           +Y +LG  A   LL G+SM+  ATG+L++ ++   + +       +  GL+ ++ GL + 
Sbjct: 162 KYFVLGAMASGFLLYGLSMMYGATGSLDVNEVFKTIASGKVNHQVLVFGLVFIVAGLAFK 221

Query: 213 SGLPPFHTVKADIYARAKPHVAAMLQTYSKFVLVALLLVIFKLFGGLSYFA-SAHGVLIG 271
            G  PFH    D+Y  A   +  ++    +  L A  ++I  L   L   A     +L  
Sbjct: 222 VGAAPFHMWVPDVYQGAPTAITLLIGAAPE--LAAFAIIIRLLVDALQPLAIDWQQMLAV 279

Query: 272 LSVLGMVFGVVMALLQTDYKKLLAYHAISQGGYVAAGIALGT--------PLGIVAGIFH 323
           L++  ++ G + A+ Q++ K++LAY  ISQ G++  G+  G+             A +F+
Sbjct: 280 LAIASLLVGNLAAIAQSNLKRMLAYSTISQMGFMLLGLVAGSDQQGTYNAQYAYSASMFY 339

Query: 324 AINHVIYKSALFLGAHIVERR--KEGNLNKLGGLLPVIPATAFMVLCAKLAISGVPPFNG 381
            + +V+   A F    ++ R   +   +  L GL    P  A ++  A  +++G+PP  G
Sbjct: 340 IVTYVLTTLASFGIILLLAREGFESEEITDLAGLNQRSPLYAGVMAIAMFSLAGLPPLVG 399

Query: 382 FQSKLLLAEA------AMNVNMPELAIIMILVSIGTFVSMMKAFY 420
           F +KL + +A      A+ + +   A++M L+    ++ ++K  Y
Sbjct: 400 FYAKLAVLQALIASGHAIYIGLAVFAVMMSLIGAFYYLRVVKVMY 444



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 49/197 (24%)

Query: 138 GLVIASGTEKAYRSAFRY-----LILGNFAGSILLLGVSMLLAATG--TLNITDMHNFLL 190
           GLV  S  +  Y + + Y      I+     ++   G+ +LLA  G  +  ITD+     
Sbjct: 316 GLVAGSDQQGTYNAQYAYSASMFYIVTYVLTTLASFGIILLLAREGFESEEITDLAGLNQ 375

Query: 191 NNPATPTIYGGLLMLIIGLCYGSGLPPFHTVKADIYARAKPHVAAMLQTYSKFVLVALLL 250
            +P    +Y G++   I +   +GLPP                  ++  Y+K  ++  L+
Sbjct: 376 RSP----LYAGVMA--IAMFSLAGLPP------------------LVGFYAKLAVLQALI 411

Query: 251 VIFKLFGGLSYFASAHGVLIGLSVLGMVFGVVMALLQTDYKKLLAYHA------ISQGGY 304
                       AS H + IGL+V  ++  ++ A       K++ + A      +S    
Sbjct: 412 ------------ASGHAIYIGLAVFAVMMSLIGAFYYLRVVKVMYFDAPVTATTVSAPRD 459

Query: 305 VAAGIALGTPLGIVAGI 321
           V A + +   L ++ GI
Sbjct: 460 VRAVLTINGALILILGI 476