Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Score = 158 bits (400), Expect = 3e-43
Identities = 116/396 (29%), Positives = 171/396 (43%), Gaps = 79/396 (19%)
Query: 4 TDIKKCRTYEECEDCKNKEISKCMEVCPTNAIKM----IDGKAFS--------CITCGTC 51
T+ K ++ C+ C N C+ VCP +A+ + ++GK C CG C
Sbjct: 21 TEALKLNPFKVCQLCGN-----CVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGEC 75
Query: 52 AKECPTGA-IKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDI-------REDSTGKSYPT 103
K CP I+ ++ G+ C GC C + CP + + + + T P
Sbjct: 76 VKVCPNNLKIENDKLKGF------CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPI 129
Query: 104 GM---CVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIF-KMMGKTYEFPEPKH 159
+ CV CG+C +ECP A L K ++++ S I+ + +T +
Sbjct: 130 AVTEDCVGCGVCISECPVGA--------LSIEGEKAVVDKDSCIYCSICAQTCPWNAIFV 181
Query: 160 VKIVKPAERKLRHSISIDSKKCVECGKCIYLCPKDTIIEAEMV----DGCTRCNICNEVC 215
P K S+DS C+ CG C CP+D I+ EMV GC C +C C
Sbjct: 182 AGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCKAAC 241
Query: 216 PVDAIEY-------------GQV--TENCILCGNCISKCPKDVLEI---SEFKVVKTKED 257
PVDAIE G V E C CG C KCP + + + ++ K+
Sbjct: 242 PVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKT 301
Query: 258 VKAKPEKHCINCGLCVDKCPSNALR----FENGK----ILYDPKTCTLCNTCVKECPQGV 309
KA K CI CG CV CP++ALR NGK I + P C C C++ CP +
Sbjct: 302 EKANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDM 361
Query: 310 RINKGEF---VDGGCVLCELCIKEC---PEDAISIK 339
G+ ++G CV+C CI+ C + A+S+K
Sbjct: 362 LKLTGKSEKPLEGFCVMCLKCIEACDKAKKSALSLK 397
Score = 152 bits (383), Expect = 3e-41
Identities = 119/428 (27%), Positives = 178/428 (41%), Gaps = 101/428 (23%)
Query: 37 MIDGKAFSCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIRE-D 95
MI C C C CPT A+K N + K+C CG C NVCP D +++RE +
Sbjct: 1 MIKINTEDCYMCKACENSCPTEALKLNPF-------KVCQLCGNCVNVCPNDALNLREIE 53
Query: 96 STGKS------YPTGMCVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIFKMMG 149
GK+ +PT C +CG C CP N + ++N K K
Sbjct: 54 LNGKTIKQIAYFPT-KCDLCGECVKVCPNNLK-------IENDKLKGFCVGCMKCVDACP 105
Query: 150 KTYEFPEPKHVKIVKPAERKL---RHSISIDSKKCVECGKCIYLCPKDTI-IEAEMV--- 202
+Y E +V+PA+R + + I++ ++ CV CG CI CP + IE E
Sbjct: 106 DSYVGME----GVVEPAKRNITLPKEPIAV-TEDCVGCGVCISECPVGALSIEGEKAVVD 160
Query: 203 -DGCTRCNICNEVCPVDAI---------------EYGQVTENCILCGNCISKCPKDVLEI 246
D C C+IC + CP +AI ++ ++ CI CG+C KCP+D++ +
Sbjct: 161 KDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL 220
Query: 247 SEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALR----------FENGKILYDPKTCT 296
+E V P K C CGLC CP +A+ + I++D + C
Sbjct: 221 NEMVAV---------PPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCA 271
Query: 297 LCNTCVKEC---------PQGVRINKGEFVDGG-----CVLCELCIKECPEDAISI---- 338
C C +C P+G+ + + + C+ C C++ CP DA+ I
Sbjct: 272 YCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIGKII 331
Query: 339 ---KERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICE 395
KE + C +CG C CP D L +G S+ CV+C
Sbjct: 332 HNGKEYERI-EFSPNLCDSCGKCIETCP-------YDMLKLTGK---SEKPLEGFCVMCL 380
Query: 396 KCAIHCPR 403
KC C +
Sbjct: 381 KCIEACDK 388
Score = 150 bits (378), Expect = 1e-40
Identities = 94/341 (27%), Positives = 151/341 (44%), Gaps = 53/341 (15%)
Query: 179 KKCVECGKCIYLCPKDTIIEAEM-VDGCT---------RCNICNE---VCPVDA-IEYGQ 224
K C CG C+ +CP D + E+ ++G T +C++C E VCP + IE +
Sbjct: 30 KVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNLKIENDK 89
Query: 225 VTENCILCGNCISKCP------KDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPS 278
+ C+ C C+ CP + V+E ++ + KE + + C+ CG+C+ +CP
Sbjct: 90 LKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTED--CVGCGVCISECPV 147
Query: 279 NALRFENGKILYDPKTCTLCNTCVKECPQGVRINKGE------------FVDGG-CVLCE 325
AL E K + D +C C+ C + CP G+ VD C+ C
Sbjct: 148 GALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCG 207
Query: 326 LCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKV 385
C +CP D I + E ++ + C ACG C CP DAI +V++ + V
Sbjct: 208 DCTDKCPRDLIVLNE---MVAVPPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIV 264
Query: 386 IFNDNCVICEKCAIHCPRDVIE--NTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPND 443
+ C C CAI CP + I N G ++ R+ + + C++CG C CPND
Sbjct: 265 WDEEKCAYCGPCAIKCPNNAITVVNPKG-LEMPSRKKTEKANEFKMCIRCGACVQSCPND 323
Query: 444 AIDKGEI------------NTEKCEYCSACVNICPTRAIRI 472
A+ G+I + C+ C C+ CP +++
Sbjct: 324 ALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKL 364
Score = 148 bits (374), Expect = 3e-40
Identities = 124/443 (27%), Positives = 170/443 (38%), Gaps = 107/443 (24%)
Query: 70 VNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARLYFDPSSL 129
+N + C C C+N CP + + + P +C +CG C CP +A
Sbjct: 4 INTEDCYMCKACENSCPTEALKLN--------PFKVCQLCGNCVNVCPNDAL-------- 47
Query: 130 KNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIY 189
N + ++ GKT + I+ KC CG+C+
Sbjct: 48 -NLRE----------IELNGKTIK-------------------QIAYFPTKCDLCGECVK 77
Query: 190 LCPKDTIIEAEMVDG-CTRCNICNEVCPVDAI-----------------EYGQVTENCIL 231
+CP + IE + + G C C C + CP + E VTE+C+
Sbjct: 78 VCPNNLKIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVG 137
Query: 232 CGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENGK---- 287
CG CIS+CP L I K V K+ CI C +C CP NA+ F GK
Sbjct: 138 CGVCISECPVGALSIEGEKAVVDKDS--------CIYCSICAQTCPWNAI-FVAGKKSPK 188
Query: 288 -------ILYDPKTCTLCNTCVKECPQGVRINKGEFV---DGGCVLCELCIKECPEDAIS 337
D C C C +CP+ + I E V GC C LC CP DAI
Sbjct: 189 RDKNIVKFSVDSDLCIGCGDCTDKCPRDL-IVLNEMVAVPPKGCPACGLCKAACPVDAIE 247
Query: 338 -IKERSKFTSI-------DKEECIACGTCSMVCPNDAITVV-IDSLNFSGNKVHSKVIFN 388
+ E + I D+E+C CG C++ CPN+AITVV L K K
Sbjct: 248 LVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEF 307
Query: 389 DNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD--NDYCVKCGLCTIICPNDAI- 445
C+ C C CP D + K++ Y R + + C CG C CP D +
Sbjct: 308 KMCIRCGACVQSCPNDALR----IGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLK 363
Query: 446 --DKGEINTEK-CEYCSACVNIC 465
K E E C C C+ C
Sbjct: 364 LTGKSEKPLEGFCVMCLKCIEAC 386
Score = 143 bits (361), Expect = 9e-39
Identities = 95/300 (31%), Positives = 128/300 (42%), Gaps = 49/300 (16%)
Query: 203 DGCTRCNICNEVCPVDAIEYGQVTENCILCGNCISKCPKDVLEISEFKVV-KTKEDVKAK 261
+ C C C CP +A++ + C LCGNC++ CP D L + E ++ KT + +
Sbjct: 7 EDCYMCKACENSCPTEALKLNPF-KVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYF 65
Query: 262 PEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQGVRINKGEF----- 316
P K C CG CV CP+N L+ EN K+ C C CV CP +G
Sbjct: 66 PTK-CDLCGECVKVCPNN-LKIENDKL---KGFCVGCMKCVDACPDSYVGMEGVVEPAKR 120
Query: 317 ----------VDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDA 366
V CV C +CI ECP A+SI+ +DK+ CI C C+ CP +A
Sbjct: 121 NITLPKEPIAVTEDCVGCGVCISECPVGALSIEGEKAV--VDKDSCIYCSICAQTCPWNA 178
Query: 367 ITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD 426
I V + + +D C+ C C CPRD+I N +
Sbjct: 179 IFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL-----------NEMVAVP 227
Query: 427 NDYCVKCGLCTIICPNDAI-------------DKGEI-NTEKCEYCSACVNICPTRAIRI 472
C CGLC CP DAI D+G + + EKC YC C CP AI +
Sbjct: 228 PKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITV 287
Score = 135 bits (340), Expect = 3e-36
Identities = 104/351 (29%), Positives = 144/351 (41%), Gaps = 77/351 (21%)
Query: 174 ISIDSKKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVCPVDAIEYGQVTEN----- 228
I I+++ C C C CP + + + C C C VCP DA+ ++ N
Sbjct: 2 IKINTEDCYMCKACENSCPTEAL-KLNPFKVCQLCGNCVNVCPNDALNLREIELNGKTIK 60
Query: 229 --------CILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNA 280
C LCG C+ CP ++ K + D K + C+ C CVD CP +
Sbjct: 61 QIAYFPTKCDLCGECVKVCPNNL---------KIEND---KLKGFCVGCMKCVDACPDSY 108
Query: 281 LRFE--------NGKILYDP----KTCTLCNTCVKECPQGVRINKGE--FVD-GGCVLCE 325
+ E N + +P + C C C+ ECP G +GE VD C+ C
Sbjct: 109 VGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIEGEKAVVDKDSCIYCS 168
Query: 326 LCIKECPEDAISI---------KERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNF 376
+C + CP +AI + K KF S+D + CI CG C+ CP D I +
Sbjct: 169 ICAQTCPWNAIFVAGKKSPKRDKNIVKF-SVDSDLCIGCGDCTDKCPRDLIVL------- 220
Query: 377 SGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLC 436
N++ + + C C C CP D IE + + I D + C CG C
Sbjct: 221 --NEMVA--VPPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPC 276
Query: 437 TIICPNDAID----KG-----EINTEK------CEYCSACVNICPTRAIRI 472
I CPN+AI KG TEK C C ACV CP A+RI
Sbjct: 277 AIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRI 327