Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 159 a.a., 4Fe-4S dicluster domain-containing protein from Magnetospirillum magneticum AMB-1

 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 27/157 (17%)

Query: 288 ILYDPKTCTLCNTCVKEC---------PQGVRI------NKGEFVDGGCVLCEL--CIKE 330
           +L  P  CT C  C   C         P   RI      ++  FV   C  C    C++ 
Sbjct: 5   LLIQPAKCTGCRQCEMACSFEKERSFNPSKSRIRVFDIHSEARFVPYTCTQCAQAWCLQA 64

Query: 331 CPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDN 390
           CP DAI I   ++   ++   C+ C  C++ CP   I  V DS          KV   D 
Sbjct: 65  CPVDAIGIDAVTRAKVVNDNICVGCKVCTIACPFGTINYVADS---------GKVAKCDL 115

Query: 391 CVICEKCAIHCPRDVIENTSGHKKVVDRENSY-IRTD 426
           C     CA  CP   I      +   D+  ++ ++TD
Sbjct: 116 CGGDPACAKACPTGAITYVDAEQTGYDKMRAWAMKTD 152



 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 29/139 (20%)

Query: 347 IDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKV-----HSKVIFND-NCVICEK--CA 398
           I   +C  C  C M C  +       S N S +++     HS+  F    C  C +  C 
Sbjct: 7   IQPAKCTGCRQCEMACSFEKER----SFNPSKSRIRVFDIHSEARFVPYTCTQCAQAWCL 62

Query: 399 IHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICP----NDAIDKGEINTEK 454
             CP D I   +  +  V  +N         CV C +CTI CP    N   D G++   K
Sbjct: 63  QACPVDAIGIDAVTRAKVVNDN--------ICVGCKVCTIACPFGTINYVADSGKV--AK 112

Query: 455 CEYCS---ACVNICPTRAI 470
           C+ C    AC   CPT AI
Sbjct: 113 CDLCGGDPACAKACPTGAI 131



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 43  FSCITCGT--CAKECPTGAIKKNEYG-GYYVNRKLCTGCGICKNVCPIDIIDIREDSTGK 99
           ++C  C    C + CP  AI  +       VN  +C GC +C   CP   I+   DS GK
Sbjct: 51  YTCTQCAQAWCLQACPVDAIGIDAVTRAKVVNDNICVGCKVCTIACPFGTINYVADS-GK 109

Query: 100 SYPTGMCVMCG---LCTTECPYNARLYFD 125
                 C +CG    C   CP  A  Y D
Sbjct: 110 ---VAKCDLCGGDPACAKACPTGAITYVD 135



 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 24/146 (16%)

Query: 170 LRHSISIDSKKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVCPVDAIEYGQVTENC 229
           ++ S+ I   KC  C +C   C  +   E       +R  + +       + Y      C
Sbjct: 1   MQKSLLIQPAKCTGCRQCEMACSFEK--ERSFNPSKSRIRVFDIHSEARFVPY-----TC 53

Query: 230 ILCGN--CISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRF--EN 285
             C    C+  CP D + I      K   D        C+ C +C   CP   + +  ++
Sbjct: 54  TQCAQAWCLQACPVDAIGIDAVTRAKVVND------NICVGCKVCTIACPFGTINYVADS 107

Query: 286 GKILYDPKTCTLCN---TCVKECPQG 308
           GK+      C LC     C K CP G
Sbjct: 108 GKV----AKCDLCGGDPACAKACPTG 129



 Score = 37.7 bits (86), Expect = 3e-07
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 26  CMEVCPTNAI--------KMIDGKAFSCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTG 77
           C++ CP +AI        K+++     C+ C  C   CP G I      G      LC G
Sbjct: 61  CLQACPVDAIGIDAVTRAKVVNDNI--CVGCKVCTIACPFGTINYVADSGKVAKCDLCGG 118

Query: 78  CGICKNVCPIDII 90
              C   CP   I
Sbjct: 119 DPACAKACPTGAI 131



 Score = 30.0 bits (66), Expect = 6e-05
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 176 IDSKKCVECGKCIYLCPKDTI---IEAEMVDGCTRCN---ICNEVCPVDAIEY 222
           ++   CV C  C   CP  TI    ++  V  C  C     C + CP  AI Y
Sbjct: 81  VNDNICVGCKVCTIACPFGTINYVADSGKVAKCDLCGGDPACAKACPTGAITY 133



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 43/92 (46%)

Query: 75  CTGCGICK-------------------------------------------NVCPIDIID 91
           CTGC  C+                                             CP+D I 
Sbjct: 12  CTGCRQCEMACSFEKERSFNPSKSRIRVFDIHSEARFVPYTCTQCAQAWCLQACPVDAIG 71

Query: 92  IREDSTGKSYPTGMCVMCGLCTTECPYNARLY 123
           I   +  K     +CV C +CT  CP+    Y
Sbjct: 72  IDAVTRAKVVNDNICVGCKVCTIACPFGTINY 103