Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 205 a.a., hydrogenase 4 Fe-S subunit (VIMSS) from Escherichia coli BW25113

 Score = 50.4 bits (119), Expect = 5e-11
 Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 56/206 (27%)

Query: 285 NGKILYDPKTCTLCNTCVKECP-----QGVR------INKGEFVDGG--CVLCEL--CIK 329
           N  ++ +P  CT CNTC+  C      QG++      + K   +     C  CE   C++
Sbjct: 2   NRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCLQ 61

Query: 330 ECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNK---VHSKVI 386
            CP +AIS  +R     +++  CI C  C++VCP  AI+        SG++    H++ +
Sbjct: 62  VCPVNAIS--QRDDAIQLNESLCIGCKLCAVVCPFGAISA-------SGSRPVNAHAQYV 112

Query: 387 FNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAID 446
           F          A    +D  EN      ++  E           VKC LC      D + 
Sbjct: 113 FQ---------AEGSLKDGEENAPTQHALLRWEPGV----QTVAVKCDLC------DFLP 153

Query: 447 KGEINTEKCEYCSACVNICPTRAIRI 472
           +G           ACV  CP +A+R+
Sbjct: 154 EG----------PACVRACPNQALRL 169



 Score = 39.7 bits (91), Expect = 9e-08
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 18 CKNKEISKCMEVCPTNAIKMIDG----KAFSCITCGTCAKECPTGAI 60
          C + E + C++VCP NAI   D         CI C  CA  CP GAI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97



 Score = 35.0 bits (79), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 81  CKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNA 120
           C  VCP++ I  R+D+   +    +C+ C LC   CP+ A
Sbjct: 59  CLQVCPVNAISQRDDAIQLN--ESLCIGCKLCAVVCPFGA 96



 Score = 33.5 bits (75), Expect = 7e-06
 Identities = 38/164 (23%), Positives = 54/164 (32%), Gaps = 55/164 (33%)

Query: 181 CVECGKCIYLC------------PKDTIIEAEMVDGCTRCNICNE-----VCPVDAIEYG 223
           C  C  C+  C            P+  + +   +     C+ C E     VCPV+AI   
Sbjct: 12  CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCLQVCPVNAISQR 71

Query: 224 ----QVTEN-CILCGNCISKCPKDVLEISEFKVVKT------------KEDVKAKPEKHC 266
               Q+ E+ CI C  C   CP   +  S  + V              K+  +  P +H 
Sbjct: 72  DDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEENAPTQHA 131

Query: 267 ------------INCGLC---------VDKCPSNALRFENGKIL 289
                       + C LC         V  CP+ ALR   G  L
Sbjct: 132 LLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRLITGDSL 175



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 229 CILCGNCISKCP-----KDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRF 283
           C  C  C++ C      + + +     + KT          HC     C+  CP NA+  
Sbjct: 12  CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAP-CLQVCPVNAISQ 70

Query: 284 ENGKILYDPKTCTLCNTCVKECPQG 308
            +  I  +   C  C  C   CP G
Sbjct: 71  RDDAIQLNESLCIGCKLCAVVCPFG 95