Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., periplasmic nitrate reductase, ferredoxin-like protein from Agrobacterium fabrum C58

 Score = 59.3 bits (142), Expect = 9e-14
 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 32/147 (21%)

Query: 348 DKEECIACGTCSMVCPNDAITVV--IDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDV 405
           D   C  C  C   CP   IT+V  + S+NFS  +          C  C KCA  CP  V
Sbjct: 32  DLAACSGCAKCVEACPTGIITMVGGLPSVNFSAGE----------CTFCGKCAQACPEPV 81

Query: 406 IENTSGHKKVVDRENSYIRTDNDYC-----VKCGLCTIICPNDAID----KG-----EIN 451
                 H         ++    + C     V C  C   CP +AI     +G      + 
Sbjct: 82  FATPDAHSF------DHVMAIGEGCLAFGNVDCQACRDACPTEAIRFRPRRGGPFVPALV 135

Query: 452 TEKCEYCSACVNICPTRAIRIYRTWNE 478
            + C  C ACV++CP   I+I  T  E
Sbjct: 136 EDACTGCGACVSVCPVGVIKIKETARE 162



 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 22/120 (18%)

Query: 15  CEDCKNKEISKCMEVCPTNAIKMIDG------KAFSCITCGTCAKECPTGAIKKNEYGGY 68
           C  C     +KC+E CPT  I M+ G       A  C  CG CA+ CP       +   +
Sbjct: 36  CSGC-----AKCVEACPTGIITMVGGLPSVNFSAGECTFCGKCAQACPEPVFATPDAHSF 90

Query: 69  YVNRKLCTG--------CGICKNVCPIDIIDIREDSTGKSYPT---GMCVMCGLCTTECP 117
                +  G        C  C++ CP + I  R    G   P      C  CG C + CP
Sbjct: 91  DHVMAIGEGCLAFGNVDCQACRDACPTEAIRFRPRRGGPFVPALVEDACTGCGACVSVCP 150



 Score = 53.1 bits (126), Expect = 6e-12
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 22/105 (20%)

Query: 14  ECEDCKNKEISKCMEVCPTNAIKMIDGK-------------AFSCITCGTCAKECPTGAI 60
           EC  C      KC + CP       D               AF  + C  C   CPT AI
Sbjct: 66  ECTFC-----GKCAQACPEPVFATPDAHSFDHVMAIGEGCLAFGNVDCQACRDACPTEAI 120

Query: 61  K-KNEYGGYYVNRKL---CTGCGICKNVCPIDIIDIREDSTGKSY 101
           + +   GG +V   +   CTGCG C +VCP+ +I I+E +    Y
Sbjct: 121 RFRPRRGGPFVPALVEDACTGCGACVSVCPVGVIKIKETARETQY 165



 Score = 52.8 bits (125), Expect = 8e-12
 Identities = 39/136 (28%), Positives = 51/136 (37%), Gaps = 21/136 (15%)

Query: 286 GKILYDPKTCTLCNTCVKECPQGVRINKG-----EFVDGGCVLCELCIKECPEDAISIKE 340
           G  L D   C+ C  CV+ CP G+    G      F  G C  C  C + CPE   +  +
Sbjct: 27  GVALSDLAACSGCAKCVEACPTGIITMVGGLPSVNFSAGECTFCGKCAQACPEPVFATPD 86

Query: 341 RSKFTSIDK--EECIA-----CGTCSMVCPNDAITVVIDSLNFSGNKVHSKV--IFNDNC 391
              F  +    E C+A     C  C   CP +AI        F   +    V  +  D C
Sbjct: 87  AHSFDHVMAIGEGCLAFGNVDCQACRDACPTEAI-------RFRPRRGGPFVPALVEDAC 139

Query: 392 VICEKCAIHCPRDVIE 407
             C  C   CP  VI+
Sbjct: 140 TGCGACVSVCPVGVIK 155



 Score = 51.6 bits (122), Expect = 2e-11
 Identities = 41/145 (28%), Positives = 53/145 (36%), Gaps = 35/145 (24%)

Query: 177 DSKKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVCPVDAIEYGQVTENCILCGNCI 236
           D   C  C KC+  CP   I    MV G    N                   C  CG C 
Sbjct: 32  DLAACSGCAKCVEACPTGII---TMVGGLPSVNFS--------------AGECTFCGKCA 74

Query: 237 SKCPKDVLEISEFKVVKTKEDVKAKPEKHC-----INCGLCVDKCPSNALRFENGK---- 287
             CP+ V    +     + + V A  E  C     ++C  C D CP+ A+RF   +    
Sbjct: 75  QACPEPVFATPD---AHSFDHVMAIGE-GCLAFGNVDCQACRDACPTEAIRFRPRRGGPF 130

Query: 288 ---ILYDPKTCTLCNTCVKECPQGV 309
              ++ D   CT C  CV  CP GV
Sbjct: 131 VPALVED--ACTGCGACVSVCPVGV 153



 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 24/100 (24%)

Query: 173 SISIDSKKCVECGKCIYLCPKDTIIEAE---------MVDGCTR-----CNICNEVCPVD 218
           S++  + +C  CGKC   CP+      +         + +GC       C  C + CP +
Sbjct: 59  SVNFSAGECTFCGKCAQACPEPVFATPDAHSFDHVMAIGEGCLAFGNVDCQACRDACPTE 118

Query: 219 AIEY----------GQVTENCILCGNCISKCPKDVLEISE 248
           AI +            V + C  CG C+S CP  V++I E
Sbjct: 119 AIRFRPRRGGPFVPALVEDACTGCGACVSVCPVGVIKIKE 158



 Score = 49.3 bits (116), Expect = 9e-11
 Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 305 CPQGVRINKGEFVDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPN 364
           CP GV ++        C  C  C++ CP   I++       +    EC  CG C+  CP 
Sbjct: 24  CPPGVALSDL----AACSGCAKCVEACPTGIITMVGGLPSVNFSAGECTFCGKCAQACP- 78

Query: 365 DAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYI- 423
           + +    D+ +F       +       V C+ C   CP + I           R   ++ 
Sbjct: 79  EPVFATPDAHSFDHVMAIGEGCLAFGNVDCQACRDACPTEAIRFRP------RRGGPFVP 132

Query: 424 RTDNDYCVKCGLCTIICP 441
               D C  CG C  +CP
Sbjct: 133 ALVEDACTGCGACVSVCP 150



 Score = 37.0 bits (84), Expect = 5e-07
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 13  EECEDCKNKEISKCMEVCPTNAIKMID--GKAF-------SCITCGTCAKECPTGAIKKN 63
           E C    N +   C + CPT AI+     G  F       +C  CG C   CP G IK  
Sbjct: 98  EGCLAFGNVDCQACRDACPTEAIRFRPRRGGPFVPALVEDACTGCGACVSVCPVGVIKIK 157

Query: 64  E 64
           E
Sbjct: 158 E 158