Pairwise Alignments

Query, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis S2

Subject, 399 a.a., Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) from Variovorax sp. SCN45

 Score =  271 bits (692), Expect = 3e-77
 Identities = 154/393 (39%), Positives = 216/393 (54%), Gaps = 37/393 (9%)

Query: 4   ILVLEDGTIIRGEGFGAETEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGV 63
           IL L DGT+ +G   GA     GE+VFNT+MTGY EILTDPSY  QI+T+TYP  GNYGV
Sbjct: 13  ILALADGTVFQGNSIGAAGSTTGEVVFNTAMTGYQEILTDPSYCQQIVTLTYPHIGNYGV 72

Query: 64  EKEWFESDGIKAEGFVVKDIT--------GKELDEFLKEYNIPGISGVDTRYITRKIRSK 115
             E  E+D I A G ++KD+            L E+L   N   I+ +DTR +TR +R+ 
Sbjct: 73  NGEDIEADKIHAAGLIIKDLPLVASNFRKTATLTEYLVSGNTVAIANIDTRKLTRHLRTH 132

Query: 116 GV----IRSLLKTSTNPITKDEETELLKKVVDYPDISEIDLVPEVSTKETVIYNAED--- 168
           G     I  L +  T  +T+    + +      P ++ +DL   VS  +T  +   +   
Sbjct: 133 GAQNGCILGLAEGET--VTQALIDKAIAAAKAAPSMAGLDLAKVVSVTQTYEWTETEWKL 190

Query: 169 --------------EKTRCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKKEEIISYNPDF 214
                          K   V  D GVK++I+  + +RG  +  VP  +   +++   PD 
Sbjct: 191 VNLNGKPGYGVQITPKFHVVAFDYGVKKNILRMIAQRGARITVVPAQTPAADVLKLKPDG 250

Query: 215 VLVSNGPGDPENMSETVETVKNLIGM-LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQ 273
           + ++NGPGDPE     +  VK LI   +P  GICLGHQI+ +A G KT+K+KFGH G N 
Sbjct: 251 IFLANGPGDPEPCDYAISAVKELIETGIPTFGICLGHQIMALASGAKTFKMKFGHHGANH 310

Query: 274 PVKDVESGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKLESSDLKNTVWSV 333
           PVKD+++G+V ITSQNHGFA D+K +PA     H++L D+T++G+ + +        +  
Sbjct: 311 PVKDLDNGRVSITSQNHGFAVDEKSLPANLRPTHVSLFDNTLQGLARTD-----KPAFCF 365

Query: 334 QYHPEAGPGPHDARFLFDEMVELGIKFKAEKAN 366
           Q HPEA PGPHD  +LFD    L  K K E  N
Sbjct: 366 QGHPEASPGPHDIGYLFDRFTALMEKHKTENKN 398