Pairwise Alignments

Query, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis S2

Subject, 392 a.a., Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) from Sphingobium sp. HT1-2

 Score =  255 bits (652), Expect = 1e-72
 Identities = 153/381 (40%), Positives = 219/381 (57%), Gaps = 32/381 (8%)

Query: 3   GILVLEDGTIIRGEGFGAETEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYG 62
           G+LV  DG+ + G GFGA  + +GEL FNTS+TGY EI+TDPSY GQIIT T+P  GN G
Sbjct: 15  GVLVFADGSAVFGRGFGAVGDAVGELCFNTSITGYQEIMTDPSYAGQIITFTFPHIGNVG 74

Query: 63  VEKEWFESDGIKAEGFVVK-DITG-------KELDEFLKEYNIPGISGVDTRYITRKIRS 114
              +  E+D   A G +V+ D+T        +  D+++KE    G++GVDTR +TR IR 
Sbjct: 75  TNLDDVEADSPYALGCIVRQDVTAPSNFRNVEPFDQWMKEKGRIGLAGVDTRALTRLIRE 134

Query: 115 KGVIRSLLKTSTNPITKDEETELLKKVVDYPDISEIDLVPEVSTKETVIY---------- 164
           KG    +L  + +P    +   L  K   +P +  +DL  EV+ KE+ ++          
Sbjct: 135 KGAPNVVL--AHDPDGNFDIAALAAKAAAWPGLEGMDLAIEVTGKESRLWKDGIWTIGHG 192

Query: 165 ----NAEDEKTRCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKKEEIISYNPDFVLVSNG 220
                A +E+   V ID G K +I   LV+ G  V  +P  +  +++ + NPD V +SNG
Sbjct: 193 YGLNEAGEERPHVVAIDYGAKNNIFRNLVKAGARVTVLPATATFDQVKALNPDGVFLSNG 252

Query: 221 PGDPENMSE-TVETVKNLIGM-LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDV 278
           PGDP    +  V  ++ ++   +PV GICLGHQ++ +A+G KT K+  GHRG N PVK +
Sbjct: 253 PGDPAATGDYAVPVIQQVLAADIPVFGICLGHQLLGLAVGAKTIKMHQGHRGANHPVKRL 312

Query: 279 ESGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKLESSDLKNTVWSVQYHPE 338
             G V ITS NHGFA D   +PA +   H++L D +  GI   + S      +SVQYHPE
Sbjct: 313 SDGLVEITSMNHGFAVDVDTLPANARSTHVSLFDGSNCGIELTDKS-----AFSVQYHPE 367

Query: 339 AGPGPHDARFLFDEMVELGIK 359
           A PGP D+ +LF + V+ G+K
Sbjct: 368 ASPGPQDSFYLFKKFVD-GLK 387