Pairwise Alignments

Query, 251 a.a., YchF/TatD family DNA exonuclease from Methanococcus maripaludis S2

Subject, 268 a.a., 3'-5' ssDNA/RNA exonuclease TatD from Pseudomonas sp. DMC3

 Score = 73.6 bits (179), Expect = 4e-18
 Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 30/241 (12%)

Query: 9   IDSHCHVEDKSLNKYREDIVKRAFEKKV-QMVTSGTNLGSCRRAVELKEKYG-----IYV 62
           ID   ++ + S     + ++ RA+   V Q+V +GT++    +A+EL ++       ++ 
Sbjct: 4   IDIGVNLTNPSFADKHQAVLDRAYAAGVCQLVLTGTSVEGSEQALELCQQLDESGQRLFA 63

Query: 63  TLGYHPGRV---NADD-NAIEKVYNFIRSKEKEILAVGEIGLDFDAENIER--QENIFKK 116
           T G HP      NAD    +  + N     E  ++AVGE GLDF+ +   R  QE + ++
Sbjct: 64  TAGIHPHSASDWNADSARRLRSLLN-----ESSVVAVGECGLDFNRDFSPRPQQEKVLEE 118

Query: 117 FINLSKEVNKPVVIHARGMEERSYDILKN--DVI--SMYHCYSGSLELAKELIKNGNFIS 172
            + L+ E+  PV +H R   +R  +ILK+  D +  ++ HC++G  +     +     I 
Sbjct: 119 HLALAVELQLPVFLHERDASQRLLEILKDFRDQLPAAVVHCFTGEQKALFSYLDLDLHIG 178

Query: 173 YSTLVCFSE---HHKNLVKNLGLENVVVETDSPYLSP------IKGEKNEPKNVINVIET 223
            +  +C      H   LVK +    +++E+D+PYL P       K  +NEP  +  V+  
Sbjct: 179 ITGWICDERRGTHLHPLVKEIKPGRLMLESDAPYLLPRTLRPKPKNGRNEPAYLTEVLRE 238

Query: 224 I 224
           +
Sbjct: 239 V 239