Pairwise Alignments

Query, 251 a.a., YchF/TatD family DNA exonuclease from Methanococcus maripaludis S2

Subject, 260 a.a., putative metal-dependent hydrolase YjjV from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  104 bits (260), Expect = 2e-27
 Identities = 70/257 (27%), Positives = 136/257 (52%), Gaps = 14/257 (5%)

Query: 7   KYIDSHCHVEDKSLNKYREDIVKRAFEKKV-QMVTSGTNLGSCRRAVELKEKYG-IYVTL 64
           ++ID+HCH +    +   E  ++RA +  V +++   T   +      L EKY  +Y  L
Sbjct: 4   RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFASVQALAEKYQPLYAAL 63

Query: 65  GYHPGRVNA-DDNAIEKVYNFIRSKEKEILAVGEIGLDF--DAENIERQENIFKKFINLS 121
           G HPG +    D +++++   +  +  +++AVGEIGLD   D    ERQ+ +  + + L+
Sbjct: 64  GLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLA 123

Query: 122 KEVNKPVVIHARGMEERSYDILKNDVIS---MYHCYSGSLELAKELIKNGNFISYSTLVC 178
           K  + PV++H+R   ++    LK   +S   + H +SGSL+ A+  ++ G  I     + 
Sbjct: 124 KRYDLPVILHSRRTHDKLAMHLKRHDLSRTGVVHGFSGSLQQAERFVQLGYKIGVGGTIT 183

Query: 179 FSEHHK--NLVKNLGLENVVVETDSP--YLSPIKGEKNEPKNVINVIETIWELKKDEYSM 234
           +    K  +++  L L ++++ETD+P   L+  +G+ N P+    V + + EL+ +    
Sbjct: 184 YPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGKPNRPEQAARVFDVLCELRPE--PE 241

Query: 235 DEITKIIYNNTKRLYRI 251
           DEI +++ NNT  ++ +
Sbjct: 242 DEIAEVLLNNTYAVFSV 258