Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 514 a.a., Signal recognition particle protein from Xanthobacter sp. DMC5

 Score =  278 bits (711), Expect = 3e-79
 Identities = 170/450 (37%), Positives = 269/450 (59%), Gaps = 12/450 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   L   L+KLK    + +  V E ++++++ALI++DV + +V + +  + ++A+
Sbjct: 1   MFDTLSDRLGGILDKLKRRGALTEADVGEAMREVRRALIEADVALDVVRSFTDRVRQRAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K ++  + +VKIV+DELV  LG     ++L+      IL++G+QGSGKTTS AK+
Sbjct: 61  GVEVIKSVTPGQMVVKIVHDELVATLGSDADPIDLNAPAPVPILMVGLQGSGKTTSTAKI 120

Query: 121 ARYIQKKGLRPGLIAA-DVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
           A+ + ++G R  L+A+ D  RPAA +QL  L +++ V         ++ V+I K  +E  
Sbjct: 121 AKRLTERGKRKVLMASLDTRRPAAMEQLATLGKQVEVATL-PIVAGQSAVQIAKRAIEAA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KL   DV+++DTAGR   +EGL+AE+ E+K +T P+E++LV D   GQ A N AKAF   
Sbjct: 180 KLGGYDVVMLDTAGRVTLDEGLMAEVAEVKAVTGPHEVLLVADSLTGQDAVNTAKAFDGR 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           V   G I++T+ DG  +GG ALS  A    PIK +GTGE +D LE FDP +   RILG+G
Sbjct: 240 VGLTG-IVLTRADGDGRGGAALSMRAVTGKPIKLLGTGEKMDALEDFDPHRVAGRILGMG 298

Query: 298 DLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
           D+ +L+E+  + +D E  + + + + KG F L +L  QLE ++KMG +  ++ ++PG+  
Sbjct: 299 DVVALVERAAENIDIEKAKITAERMRKGTFDLDDLRGQLEQMAKMGGLGGLMGLMPGVAK 358

Query: 357 NMPKEA-AQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
              + A A L +   KR   +++SMT +E+  P+L+  SR +RIA G+G K EEI  LLK
Sbjct: 359 VKNQIASANLDDKVFKRQVAIINSMTPKERRAPKLLDASRKRRIAAGSGTKVEEINRLLK 418

Query: 416 YYSTTKNAFGNL-----KRGKMPKMGGQMG 440
            +    +   +L     KRG +  + G MG
Sbjct: 419 MHRQMADVMKSLGGAAGKRGPLAGLAGMMG 448