Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 458 a.a., RNA-binding protein from Pseudomonas simiae WCS417

 Score =  263 bits (672), Expect = 9e-75
 Identities = 159/452 (35%), Positives = 265/452 (58%), Gaps = 11/452 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   LS  L  +     + +  +K+ +++++ AL+++DV + +V +    ++ +A+
Sbjct: 1   MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                + L+  +  VKIV  EL  L+G   + L L     +V+L+ G+QG+GKTT+A KL
Sbjct: 61  GTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGKL 120

Query: 121 ARYI-QKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
           AR++ ++K     +++ADVYRPAA +QL+ L+ ++ V  F  +   K PV+I    ++  
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQK-PVDIANAAIKEA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK +DV+I+DTAGR   +E ++ E+K +    NP E + V+D   GQ A N AKAF ++
Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKALHAAINPVETLFVVDAMTGQDAANTAKAFGDA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS  A    PIKFIG GE  D LE F P++  SRILG+G
Sbjct: 240 LPLTG-VILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESI-DSILKGK-FTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E+ E  +D+   + +   + KGK F L +   QL+ +  MG +  ++  +P +G
Sbjct: 299 DVLSLIEQAEATLDKDKADKLAKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPNIG 358

Query: 356 G-NMPK--EAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKD 412
           G N+ +   A    E + K+ + +++SMT  E+ +PELI  SR +RIA G+G + ++I  
Sbjct: 359 GVNLAQMGNAQGAAEKQFKQMEAIINSMTPAERRDPELISGSRKRRIAMGSGTQVQDIGR 418

Query: 413 LLKYYSTTKNAFGNLK-RGKMPKMGGQMGQIM 443
           L+K +   +        +G M KM   MG ++
Sbjct: 419 LIKQHKQMQKMMKKFSAKGGMAKMMRGMGGML 450