Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 462 a.a., Signal recognition particle protein Ffh from Variovorax sp. SCN45

 Score =  239 bits (611), Expect = 1e-67
 Identities = 145/446 (32%), Positives = 251/446 (56%), Gaps = 8/446 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M   L +  S  +  +     + +  V++++++++ AL+++DV + +V +    ++ KA+
Sbjct: 1   MATALTEKFSRLVKTMSGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKAL 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +     L   + +V IV  EL   +GE    + L     +VIL+ G+QG+GKTT+ AKL
Sbjct: 61  GQEVLGSLKPGQALVGIVNRELAATMGEGVSDINLAAQPPAVILMAGLQGAGKTTTTAKL 120

Query: 121 ARY-IQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL 179
           A++ I+K+  +   ++ DVYRPAA +QLK ++++     F      K P++I +  ++  
Sbjct: 121 AKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSSPDQK-PLDIARAALDHA 179

Query: 180 KK--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           K+   DV+++DTAGR   +E L+AE+K++    +P E + V+D   GQ A N AKAFKE+
Sbjct: 180 KRHYFDVLLVDTAGRLAIDEVLMAEIKQLHAALDPVETLFVVDAMQGQDAINTAKAFKEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G I++TK DG ++GG ALS       PIKF G  E +D LE FD ++   RILG+G
Sbjct: 240 LPLTG-IILTKTDGDSRGGAALSVRQVTGVPIKFAGVSEKIDGLEVFDAERHAGRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ +L+E+    +D +  + + + +K    F L +   QL+ + +MG +  ++  +P   
Sbjct: 299 DIVALVEQVTAGVDVAAAQKLAAKVKSGAGFDLNDFLGQLQQMKQMGGLSSLMDKLPQQM 358

Query: 356 GNMPKEAAQL-TEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLL 414
                EA     E  ++R + ++ SMT  E+  PEL+K +R +RIA GAGV+ +E+  LL
Sbjct: 359 AAKATEADMTRAERDIRRKEGIIQSMTPLERRKPELLKATRKRRIAAGAGVQVQEVNRLL 418

Query: 415 KYYSTTKNAFGNLKRGKMPKMGGQMG 440
             +   +     +K G + KM  +MG
Sbjct: 419 NEFEQMQGMMKKMKGGGLMKMMKKMG 444