Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 421 a.a., Signal recognition particle receptor FtsY from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 4e-40
 Identities = 98/301 (32%), Positives = 163/301 (54%), Gaps = 14/301 (4%)

Query: 2   LDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAID 61
           LDKL   L      ++ A FV+ ++   + ++++ AL+ +D  VK    + +++  +   
Sbjct: 128 LDKLKTGLRKTGTGIQ-AVFVNAQIDDALYEELESALLMADTGVKATEYLLEDLRGRV-- 184

Query: 62  EAPPKGLSKKEHIVKIVYDELVK-LLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
               + ++     VK++  E V  LL    + L +     +VI++ G+ G+GKTTS  KL
Sbjct: 185 ---KRQMATDAGQVKVLLAEAVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKL 241

Query: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
            +++  +G    L AAD +R AA +QL   +++  V +   E    + V        K +
Sbjct: 242 TKHLANEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGKAR 301

Query: 181 KVDVIIIDTAGRHKEEEGLLAEMKEMK------DLTNPNEIILVIDGTLGQQAKNQAKAF 234
             DV+++DTAGR   +  L+ E+K++K      D T P+E++LVIDG  GQ A  Q KAF
Sbjct: 302 GKDVVLVDTAGRLPTQLHLMDELKKIKRIVTKADGTAPHEVLLVIDGNTGQNALAQVKAF 361

Query: 235 KESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRIL 294
            E++   G ++VTKLDG+AKGG   +   E   P+ FIG GE +++LE FD ++F   +L
Sbjct: 362 DETLGLTG-LIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFDAREFAQALL 420

Query: 295 G 295
           G
Sbjct: 421 G 421