Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 495 a.a., Signal recognition particle protein Ffh from Sphingobium sp. HT1-2

 Score =  259 bits (662), Expect = 1e-73
 Identities = 161/445 (36%), Positives = 254/445 (57%), Gaps = 12/445 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   L    +KL+    + +  V+  +++++ AL+++DV + +V     +   KA+
Sbjct: 1   MFDSLSDRLGGVFDKLRGRGALTEDDVRAAMREVRVALLEADVALPVVRQFVDQATEKAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                + ++  + +VKIV D L + LG  T  L +D +  +VI+++G+QGSGKTTS AK+
Sbjct: 61  GSDVLRSITPGQMVVKIVSDTLTETLGAETSDLLIDVTPPAVIMMVGLQGSGKTTSTAKI 120

Query: 121 ARYIQKKGLRPGLIAA-DVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
           A+ ++ K  +  L+A+ DV RPAA +QL  L  +I+V         + PV+I K  ++  
Sbjct: 121 AKRLKDKERKKVLMASLDVQRPAAQEQLAVLGTQIDVATL-PIVAGQQPVDIAKRALQSA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KL+  DV+++DTAGR   ++ L+ EMK + D+ NP EI+LV+D   GQ A N A +F   
Sbjct: 180 KLQGFDVVMLDTAGRLHVDQALMDEMKAVADVANPAEILLVVDSLTGQDAVNVATSFTAQ 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           V   G +++T++DG A+GG ALS  A    PIKF GTGE +D LE F P +   RILG+G
Sbjct: 240 VPLTG-VVLTRMDGDARGGAALSMRAVTGRPIKFAGTGEKLDALEPFHPARVAQRILGMG 298

Query: 298 DLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
           D+ SL+EK  + +D E  ++    + KG+F + +L +QL  + +MG +  +  M+PG+  
Sbjct: 299 DVVSLVEKAAETIDAEEADKLAKKMAKGQFDMNDLRSQLNQMRRMGGLGALAGMLPGLKK 358

Query: 357 NMPKEA-AQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
                A +   +  L     M+ SMT +E+E P LI   R  RIAKGAG   +++  LLK
Sbjct: 359 AQAAMANSGANDKTLLHLDAMIGSMTPKEREKPALINAKRKIRIAKGAGRTVQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKMGGQMG 440
            +   + A       K+ KMGG  G
Sbjct: 419 MHQEMETAM-----KKIRKMGGLKG 438