Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 458 a.a., GTPase component of the signal recognition particle (SRP) from Pseudomonas putida KT2440

 Score =  254 bits (650), Expect = 3e-72
 Identities = 155/452 (34%), Positives = 261/452 (57%), Gaps = 11/452 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   LS  L  +     + +  +K+ +++++ AL+++DV + +V +    ++ +A+
Sbjct: 1   MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKDRAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                + L+  +  VKIV  EL  L+G   + L L+ +  +V+L+ G+QG+GKTT+A KL
Sbjct: 61  GTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGKL 120

Query: 121 ARYI-QKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
           AR++ ++K     +++ADVYRPAA +QL+ L+  I V  F  +   K PV I +  +   
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQK-PVAIAEAAIREA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK +DV+I+DTAGR   +  ++ E+K +     P E + V+D   GQ A N AKAF E+
Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVKPIETLFVVDAMTGQDAANTAKAFGEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS  A    PIKFIG GE  + LE F P +  SRILG+G
Sbjct: 240 LPLTG-VVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESI-DSILKGK-FTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E+ E  +D++  + +   + KGK F L +   QL+ +  MG +  ++  +P +G
Sbjct: 299 DVLSLIEQAEQTIDKAKADKLAKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPSIG 358

Query: 356 G---NMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKD 412
           G   +    A    E + K+ + +++SMT  E+ +P+LI  SR +RIA G+G + ++I  
Sbjct: 359 GVNLSQMGNAQGAAEKQFKQMEAIINSMTPAERRDPDLISGSRKRRIALGSGTQVQDIGR 418

Query: 413 LLKYYSTTKNAFGNLK-RGKMPKMGGQMGQIM 443
           L+K +   +        +G M KM   +G ++
Sbjct: 419 LIKQHKQMQKMMKKFSAKGGMAKMMRGLGGML 450