Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 456 a.a., Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  243 bits (619), Expect = 1e-68
 Identities = 145/446 (32%), Positives = 256/446 (57%), Gaps = 8/446 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M   L   LS  + +++    + +  V +++++++ AL+++DV + +V +    ++ KA+
Sbjct: 1   MASALSDRLSRIVKEMRGQARITEGNVTDMLREVRMALLEADVALPVVRDFIARVKDKAL 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +     L+  + +V IV+ EL   +G+    + L     +VIL+ G+QG+GKTT+ AKL
Sbjct: 61  GQEVVGSLTPGQALVGIVHRELAATMGDGVADINLAAQPPAVILMAGLQGAGKTTTTAKL 120

Query: 121 ARY-IQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL 179
           A++ I+K+  +   ++ DVYRPAA +QLK ++ +     F   T  + PV+I +  ++  
Sbjct: 121 AKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWF-PSTPDQKPVDIARAAIDHA 179

Query: 180 KK--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           +K   DV+++DTAGR   +E L+ E++E+  +  P E + V+D   GQ A N A+AFK++
Sbjct: 180 RKHYFDVLLVDTAGRLAIDEALMREIQELHAVLKPVETLFVVDAMQGQDAINTARAFKDA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G I++TKLDG ++GG ALS      APIKF G  E +D LE FD  +   R+LG+G
Sbjct: 240 LPLTG-IVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDADRHAQRVLGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILKG--KFTLIELYAQLETISKMGPMKQILSMIP-GM 354
           D+ +L+E+    +D +  + + + +K    F L +   QL  + +MG +  ++  +P  M
Sbjct: 299 DILALVEQVTAGVDIAAAQKLAAKVKSGEGFDLNDFLDQLRQMKQMGGLSSLMDKLPAAM 358

Query: 355 GGNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLL 414
                +      E  +KR + ++ SMT++E+  PE+IK +R +RIA GAGV  +E+  LL
Sbjct: 359 AAKAGEVDMGRAEKDIKRKEGIICSMTLKERRKPEIIKATRKRRIAAGAGVHVQEVNRLL 418

Query: 415 KYYSTTKNAFGNLKRGKMPKMGGQMG 440
           K +   ++    +K G M KM  ++G
Sbjct: 419 KEFEQMQDMMKKMKGGGMMKMMKRLG 444